Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C2H94_RS02020 Genome accession   NZ_CP026034
Coordinates   342432..343199 (-) Length   255 a.a.
NCBI ID   WP_038829711.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 337432..348199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS02000 (C2H94_01990) ppsR 337606..338418 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  C2H94_RS02005 (C2H94_01995) ccpN 338444..339082 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  C2H94_RS02010 (C2H94_02000) glyS 339215..341254 (-) 2040 WP_049141201.1 glycine--tRNA ligase subunit beta -
  C2H94_RS02015 (C2H94_02005) glyQ 341247..342134 (-) 888 WP_072175808.1 glycine--tRNA ligase subunit alpha -
  C2H94_RS02020 (C2H94_02010) recO 342432..343199 (-) 768 WP_038829711.1 DNA repair protein RecO Machinery gene
  C2H94_RS02025 (C2H94_02015) yqzL 343236..343379 (-) 144 WP_003230053.1 YqzL family protein -
  C2H94_RS02030 (C2H94_02020) era 343527..344432 (-) 906 WP_003230051.1 GTPase Era -
  C2H94_RS02035 (C2H94_02025) cdd 344413..344823 (-) 411 WP_003230049.1 cytidine deaminase -
  C2H94_RS02040 (C2H94_02030) unpK 344942..345313 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  C2H94_RS02045 (C2H94_02035) ybeY 345294..345767 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  C2H94_RS02050 (C2H94_02040) pgpH 345768..347903 (-) 2136 WP_072175800.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29293.99 Da        Isoelectric Point: 8.3080

>NTDB_id=265437 C2H94_RS02020 WP_038829711.1 342432..343199(-) (recO) [Bacillus subtilis strain PK5_52]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLVQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=265437 C2H94_RS02020 WP_038829711.1 342432..343199(-) (recO) [Bacillus subtilis strain PK5_52]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAGTGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.824

100

0.988

Multiple sequence alignment