Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2H94_RS01490 Genome accession   NZ_CP026034
Coordinates   252551..253354 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 247551..258354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS01465 (C2H94_01450) glpQ 248697..249428 (-) 732 WP_041850009.1 glycerophosphodiester phosphodiesterase -
  C2H94_RS01470 (C2H94_01455) yqiI 249507..250127 (-) 621 WP_103803305.1 N-acetylmuramoyl-L-alanine amidase -
  C2H94_RS01475 (C2H94_01460) yqiH 250142..250435 (-) 294 WP_003230284.1 lipoprotein -
  C2H94_RS01480 - 250743..250895 (+) 153 WP_014480226.1 hypothetical protein -
  C2H94_RS01485 (C2H94_01465) yqiG 250968..252086 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  C2H94_RS01490 (C2H94_01470) spo0A 252551..253354 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C2H94_RS01495 (C2H94_01475) spoIVB 253630..254910 (-) 1281 WP_103803304.1 SpoIVB peptidase -
  C2H94_RS01500 (C2H94_01480) recN 255085..256815 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  C2H94_RS01505 (C2H94_01485) argR 256848..257297 (-) 450 WP_021480005.1 arginine repressor ArgR -
  C2H94_RS01510 (C2H94_01490) yqxC 257337..258239 (-) 903 WP_019712715.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=265426 C2H94_RS01490 WP_003226427.1 252551..253354(-) (spo0A) [Bacillus subtilis strain PK5_52]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265426 C2H94_RS01490 WP_003226427.1 252551..253354(-) (spo0A) [Bacillus subtilis strain PK5_52]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment