Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H94_RS00505 Genome accession   NZ_CP026034
Coordinates   76653..77273 (+) Length   206 a.a.
NCBI ID   WP_072175980.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71653..82273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS00465 (C2H94_00455) ypqE 72784..73290 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  C2H94_RS00470 (C2H94_00460) ypqA 73428..73847 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  C2H94_RS00475 (C2H94_00465) yppG 73868..74245 (-) 378 WP_014477159.1 YppG family protein -
  C2H94_RS00480 (C2H94_00470) yppF 74433..74621 (+) 189 WP_003230690.1 YppF family protein -
  C2H94_RS00485 (C2H94_00475) yppE 74660..75031 (-) 372 WP_003246080.1 YppE family protein -
  C2H94_RS00490 (C2H94_00480) yppD 75077..75322 (-) 246 WP_038828603.1 YppD family protein -
  C2H94_RS00495 (C2H94_00485) sspM 75521..75625 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H94_RS00500 (C2H94_00490) yppC 75650..76612 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  C2H94_RS00505 (C2H94_00495) recU 76653..77273 (+) 621 WP_072175980.1 Holliday junction resolvase RecU Machinery gene
  C2H94_RS00510 (C2H94_00500) ponA 77295..80045 (+) 2751 WP_072175981.1 PBP1A family penicillin-binding protein -
  C2H94_RS00515 (C2H94_00505) ypoC 80120..80614 (-) 495 WP_041849962.1 YpoC family protein -
  C2H94_RS00520 (C2H94_00510) nth 80611..81270 (-) 660 WP_009967580.1 endonuclease III -
  C2H94_RS00525 (C2H94_00515) dnaD 81289..81987 (-) 699 WP_125121252.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23943.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265425 C2H94_RS00505 WP_072175980.1 76653..77273(+) (recU) [Bacillus subtilis strain PK5_52]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265425 C2H94_RS00505 WP_072175980.1 76653..77273(+) (recU) [Bacillus subtilis strain PK5_52]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCGCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment