Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | C2H98_RS25305 | Genome accession | NZ_CP026033 |
| Coordinates | 5259276..5260340 (+) | Length | 354 a.a. |
| NCBI ID | WP_123260857.1 | Uniprot ID | - |
| Organism | Niallia circulans strain PK3_138 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5254276..5265340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H98_RS25275 (C2H98_25230) | - | 5254302..5254619 (+) | 318 | WP_095333912.1 | MTH1187 family thiamine-binding protein | - |
| C2H98_RS25280 (C2H98_25235) | - | 5254633..5255268 (+) | 636 | WP_123257981.1 | MBL fold metallo-hydrolase | - |
| C2H98_RS25285 (C2H98_25240) | - | 5255640..5256338 (-) | 699 | WP_095332761.1 | helix-turn-helix transcriptional regulator | - |
| C2H98_RS25290 (C2H98_25245) | - | 5256612..5257658 (+) | 1047 | WP_123260856.1 | flavin-containing monooxygenase | - |
| C2H98_RS25295 (C2H98_25250) | - | 5257700..5258632 (+) | 933 | WP_095332765.1 | cation diffusion facilitator family transporter | - |
| C2H98_RS25305 (C2H98_25260) | comGA | 5259276..5260340 (+) | 1065 | WP_123260857.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| C2H98_RS25310 (C2H98_25265) | comGB | 5260312..5261364 (+) | 1053 | WP_123260858.1 | competence type IV pilus assembly protein ComGB | - |
| C2H98_RS25315 (C2H98_25270) | comGC | 5261377..5261691 (+) | 315 | WP_123260859.1 | competence type IV pilus major pilin ComGC | - |
| C2H98_RS25320 (C2H98_25275) | comGD | 5261688..5262125 (+) | 438 | WP_095332773.1 | competence type IV pilus minor pilin ComGD | - |
| C2H98_RS25325 (C2H98_25280) | - | 5262109..5262432 (+) | 324 | WP_095332775.1 | hypothetical protein | - |
| C2H98_RS25330 (C2H98_25285) | comGF | 5262429..5262872 (+) | 444 | WP_235850334.1 | competence type IV pilus minor pilin ComGF | - |
| C2H98_RS25335 (C2H98_25290) | comGG | 5262879..5263259 (+) | 381 | WP_095332777.1 | competence type IV pilus minor pilin ComGG | - |
| C2H98_RS25340 (C2H98_25295) | - | 5263314..5263502 (+) | 189 | WP_095332779.1 | YqzE family protein | - |
| C2H98_RS25345 (C2H98_25300) | - | 5263567..5264373 (-) | 807 | WP_123260860.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 40048.42 Da Isoelectric Point: 8.5649
>NTDB_id=265424 C2H98_RS25305 WP_123260857.1 5259276..5260340(+) (comGA) [Niallia circulans strain PK3_138]
MLSIEALANRIICEAVEQNATDIHITPKQKESVLQFRIANHLINHLVISANECDKLISHFKFTASMDIGERRKPQNGSIS
TTVKGQYIGLRLSTLPSHPHESLVIRILSDQNMLPIYHISLFPNISRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKTQENVLQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAHIAIRASLTGHLVLSTMH
TRDAKGAIHRLLEFGIKETEIEQTLIAITAQRLVEMVCPFCDKDCSPNCYRLENRLKRSTVFEMITGRMISDILYNRTET
KRANYKSLGDIICKGIALGYIKKGEYERWIYDEK
MLSIEALANRIICEAVEQNATDIHITPKQKESVLQFRIANHLINHLVISANECDKLISHFKFTASMDIGERRKPQNGSIS
TTVKGQYIGLRLSTLPSHPHESLVIRILSDQNMLPIYHISLFPNISRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKTQENVLQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDKETAHIAIRASLTGHLVLSTMH
TRDAKGAIHRLLEFGIKETEIEQTLIAITAQRLVEMVCPFCDKDCSPNCYRLENRLKRSTVFEMITGRMISDILYNRTET
KRANYKSLGDIICKGIALGYIKKGEYERWIYDEK
Nucleotide
Download Length: 1065 bp
>NTDB_id=265424 C2H98_RS25305 WP_123260857.1 5259276..5260340(+) (comGA) [Niallia circulans strain PK3_138]
GTGTTATCTATTGAAGCTCTAGCAAATCGTATTATTTGTGAGGCAGTAGAACAGAATGCTACTGATATTCACATAACCCC
AAAACAAAAGGAATCTGTCCTCCAATTCCGAATTGCCAATCATTTAATTAATCACTTAGTAATTTCAGCAAATGAATGCG
ACAAGTTGATCTCTCATTTCAAATTTACAGCATCTATGGATATTGGCGAAAGAAGAAAACCGCAAAATGGATCTATTTCC
ACAACAGTCAAAGGTCAGTATATTGGCTTACGACTTTCAACCTTACCATCTCACCCTCATGAGAGTTTAGTAATTCGTAT
ACTTTCCGACCAAAATATGCTTCCAATCTATCACATCTCTTTATTTCCGAATATTTCTCGTAAATTAATCTCCTTGTTAA
AGCATGCACACGGATTAATAATTCTGACCGGTCCAACTGGGTCTGGCAAGACAACAACACTCTACTCTCTCCTAAATGAA
AATGCACATCTTTATCAGCGAAATGTGATTAGCTTAGAAGATCCCATTGAAAAAACGCAGGAAAACGTTTTGCAAATTCA
AGTCAATGAGAAAGCTGGTATTACGTATTCCACTGGCTTAAAAGCAATTCTTCGCCATGATCCAGATATTATTATGGTTG
GAGAAATCCGCGACAAAGAAACTGCTCATATTGCGATAAGGGCGAGCTTAACAGGTCATTTAGTATTGAGCACAATGCAT
ACGAGAGATGCGAAAGGTGCGATTCATCGACTGTTAGAGTTTGGTATTAAAGAGACTGAGATTGAACAAACCTTAATCGC
TATTACTGCTCAAAGACTAGTTGAAATGGTATGTCCTTTTTGTGATAAAGATTGTTCCCCTAACTGTTACCGTTTAGAAA
ACCGCTTAAAAAGATCAACAGTGTTTGAAATGATTACAGGCAGGATGATTTCTGATATTCTCTATAACCGAACAGAAACT
AAGAGAGCTAACTATAAATCACTAGGAGATATTATTTGTAAAGGGATTGCCCTAGGCTATATAAAGAAAGGAGAATATGA
ACGGTGGATTTATGATGAAAAATAA
GTGTTATCTATTGAAGCTCTAGCAAATCGTATTATTTGTGAGGCAGTAGAACAGAATGCTACTGATATTCACATAACCCC
AAAACAAAAGGAATCTGTCCTCCAATTCCGAATTGCCAATCATTTAATTAATCACTTAGTAATTTCAGCAAATGAATGCG
ACAAGTTGATCTCTCATTTCAAATTTACAGCATCTATGGATATTGGCGAAAGAAGAAAACCGCAAAATGGATCTATTTCC
ACAACAGTCAAAGGTCAGTATATTGGCTTACGACTTTCAACCTTACCATCTCACCCTCATGAGAGTTTAGTAATTCGTAT
ACTTTCCGACCAAAATATGCTTCCAATCTATCACATCTCTTTATTTCCGAATATTTCTCGTAAATTAATCTCCTTGTTAA
AGCATGCACACGGATTAATAATTCTGACCGGTCCAACTGGGTCTGGCAAGACAACAACACTCTACTCTCTCCTAAATGAA
AATGCACATCTTTATCAGCGAAATGTGATTAGCTTAGAAGATCCCATTGAAAAAACGCAGGAAAACGTTTTGCAAATTCA
AGTCAATGAGAAAGCTGGTATTACGTATTCCACTGGCTTAAAAGCAATTCTTCGCCATGATCCAGATATTATTATGGTTG
GAGAAATCCGCGACAAAGAAACTGCTCATATTGCGATAAGGGCGAGCTTAACAGGTCATTTAGTATTGAGCACAATGCAT
ACGAGAGATGCGAAAGGTGCGATTCATCGACTGTTAGAGTTTGGTATTAAAGAGACTGAGATTGAACAAACCTTAATCGC
TATTACTGCTCAAAGACTAGTTGAAATGGTATGTCCTTTTTGTGATAAAGATTGTTCCCCTAACTGTTACCGTTTAGAAA
ACCGCTTAAAAAGATCAACAGTGTTTGAAATGATTACAGGCAGGATGATTTCTGATATTCTCTATAACCGAACAGAAACT
AAGAGAGCTAACTATAAATCACTAGGAGATATTATTTGTAAAGGGATTGCCCTAGGCTATATAAAGAAAGGAGAATATGA
ACGGTGGATTTATGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
53.371 |
100 |
0.537 |