Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C2H98_RS18115 Genome accession   NZ_CP026033
Coordinates   3742396..3744237 (+) Length   613 a.a.
NCBI ID   WP_420845917.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_138     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3737396..3749237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H98_RS18095 (C2H98_18075) - 3737946..3738155 (+) 210 WP_123260336.1 hypothetical protein -
  C2H98_RS18100 (C2H98_18080) - 3738703..3739767 (-) 1065 WP_123258458.1 hypothetical protein -
  C2H98_RS18105 (C2H98_18085) - 3739934..3740491 (+) 558 WP_123258457.1 thioredoxin family protein -
  C2H98_RS18110 (C2H98_18090) rcrP 3740646..3742403 (+) 1758 WP_123260337.1 ABC transporter ATP-binding protein Regulator
  C2H98_RS18115 (C2H98_18095) rcrQ 3742396..3744237 (+) 1842 WP_420845917.1 ABC transporter ATP-binding protein Regulator
  C2H98_RS18120 (C2H98_18100) - 3744315..3744818 (+) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2H98_RS18125 (C2H98_18105) - 3745164..3746012 (-) 849 WP_164464042.1 MerR family transcriptional regulator -
  C2H98_RS18130 (C2H98_18110) - 3746033..3747196 (-) 1164 WP_095332598.1 MFS transporter -
  C2H98_RS18135 (C2H98_18115) - 3747372..3747941 (+) 570 WP_123260339.1 DUF6434 domain-containing protein -
  C2H98_RS18140 (C2H98_18120) - 3748259..3749197 (-) 939 WP_123260340.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68197.95 Da        Isoelectric Point: 5.0181

>NTDB_id=265410 C2H98_RS18115 WP_420845917.1 3742396..3744237(+) (rcrQ) [Niallia circulans strain PK3_138]
MAKKNEVKEEKNPTQNEELGNQPAKSIPPRAKGMNFSSLKQLVIYCKAYFPIIIFALILAMTAAIFSIIGPDQLSKMTDY
ITAGLMGDIDLDAVYDVAILLVFLYGLGFIFNYVQGYIMATVTQRISKQLRRDISVKINRLPLKYFDNTTTGDVLSRVTN
DVDMVGQTMNQSISSLITAITMFVGSLIMMFYTNWIMAIAAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHIEEI
YSGHNVVKAYNAEQQAKDDFFAINTRLYESAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGHISFGVIVAFMLY
IRLFTQPLQQIAQAATNLQSTAAASGRVFEFLSEEELAVEEEKTAKLANIKGDVEFKHVRFGYSEDKTIIEDFSVQVAAG
QKVAIVGPTGAGKTTLINLLMRFYEINGGEITIDGIPTNEMTREALHELFCMVLQDTWIFEGSIRDNIVYSREGVSDEEV
EAACKAVGLHHFIKTLPNGYDTILDDKTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQTAMDKLTEGKT
SFVIAHRLSTIKNADLILVMKDGDIIEAGTHKELIEKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=265410 C2H98_RS18115 WP_420845917.1 3742396..3744237(+) (rcrQ) [Niallia circulans strain PK3_138]
TTGGCTAAGAAAAACGAAGTAAAAGAAGAGAAAAATCCAACCCAAAATGAGGAGTTGGGGAACCAACCAGCAAAATCGAT
TCCTCCGCGTGCAAAAGGGATGAATTTTTCCAGTTTAAAGCAGCTGGTAATTTACTGTAAAGCTTACTTTCCGATTATCA
TCTTTGCTTTAATTCTGGCGATGACAGCGGCAATTTTTAGCATTATCGGTCCTGATCAGCTAAGCAAAATGACGGATTAT
ATTACAGCAGGACTGATGGGAGACATTGATCTAGATGCTGTATATGATGTAGCGATTCTGTTGGTGTTCCTATACGGTTT
AGGCTTTATTTTTAACTATGTGCAAGGCTATATTATGGCAACTGTCACCCAGAGAATTTCAAAACAATTAAGAAGAGACA
TTTCGGTAAAAATTAACCGTCTGCCTTTAAAGTATTTTGATAATACAACAACAGGTGATGTCCTTAGCCGGGTTACAAAT
GATGTCGATATGGTGGGACAGACGATGAACCAAAGTATTAGCAGCTTAATTACGGCTATTACTATGTTCGTCGGTTCCTT
AATCATGATGTTCTACACCAACTGGATTATGGCAATTGCAGCTATTCTTTCTACCTTTATTGGTTTTGCGTTTATGTTCT
TTATTATTTCGAAATCACAGAAATACTTCGCTCAACAGCAGCAAGAGCTTGGAAAATTAAATGGTCATATTGAAGAAATC
TATTCTGGCCATAATGTCGTGAAAGCTTATAATGCAGAGCAGCAGGCGAAGGATGACTTTTTTGCTATCAATACACGATT
ATATGAGAGTGCGTGGAAATCGCAATTTATGTCAGGGCTGATGATGCCATTAATGATGTTTATTGGAAACTTTGGTTATG
TGGTTGTATGTATTGTCGGGGCTGCTCTTGCTGTAAATGGCCATATTTCATTTGGTGTTATTGTTGCCTTTATGCTGTAC
ATTCGCTTATTTACACAGCCGCTGCAACAAATTGCGCAAGCAGCGACAAATCTGCAATCCACAGCAGCAGCAAGTGGGCG
TGTGTTTGAGTTCTTGTCCGAAGAAGAACTAGCAGTAGAAGAGGAGAAAACAGCAAAATTGGCAAATATCAAAGGTGATG
TGGAATTTAAGCATGTCCGCTTTGGCTACAGTGAAGATAAAACAATCATTGAAGACTTTTCCGTACAAGTAGCCGCTGGC
CAGAAGGTCGCAATCGTAGGACCGACTGGCGCTGGAAAAACAACATTAATTAATTTGCTGATGCGCTTTTATGAAATAAA
TGGCGGCGAGATCACAATTGACGGGATTCCAACCAACGAAATGACAAGAGAGGCCCTGCATGAGCTTTTCTGTATGGTGC
TGCAAGATACTTGGATATTTGAAGGGTCTATTCGCGACAATATCGTCTATTCAAGAGAAGGAGTATCAGATGAAGAGGTA
GAAGCTGCCTGCAAAGCAGTTGGCTTGCATCATTTTATCAAAACATTGCCAAACGGCTATGATACTATCTTGGATGACAA
AACAAGTTTATCAGCAGGTCAAAAACAGCTTATCACCATCGCACGTGCCATGGTAAAAATGGCGCCATTACTTATCCTAG
ATGAAGCGACTAGCTCCGTGGATACCCGTACGGAATTACTGATTCAAACAGCAATGGATAAGCTGACAGAAGGAAAAACT
TCCTTTGTGATCGCCCATAGACTTTCTACAATTAAAAATGCCGATTTAATACTTGTCATGAAAGACGGCGATATTATCGA
AGCCGGAACACATAAAGAATTAATCGAGAAAAATGGATTTTATGCTGAGCTTTATAATAGCCAGTTTGAAGAAGCATCGT
AA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-328)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.609

93.801

0.55

Multiple sequence alignment