Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C2H98_RS18110 Genome accession   NZ_CP026033
Coordinates   3740646..3742403 (+) Length   585 a.a.
NCBI ID   WP_123260337.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_138     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3735646..3747403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H98_RS18090 (C2H98_18070) - 3736468..3737802 (+) 1335 WP_123260335.1 sulfatase -
  C2H98_RS18095 (C2H98_18075) - 3737946..3738155 (+) 210 WP_123260336.1 hypothetical protein -
  C2H98_RS18100 (C2H98_18080) - 3738703..3739767 (-) 1065 WP_123258458.1 hypothetical protein -
  C2H98_RS18105 (C2H98_18085) - 3739934..3740491 (+) 558 WP_123258457.1 thioredoxin family protein -
  C2H98_RS18110 (C2H98_18090) rcrP 3740646..3742403 (+) 1758 WP_123260337.1 ABC transporter ATP-binding protein Regulator
  C2H98_RS18115 (C2H98_18095) rcrQ 3742396..3744237 (+) 1842 WP_420845917.1 ABC transporter ATP-binding protein Regulator
  C2H98_RS18120 (C2H98_18100) - 3744315..3744818 (+) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2H98_RS18125 (C2H98_18105) - 3745164..3746012 (-) 849 WP_164464042.1 MerR family transcriptional regulator -
  C2H98_RS18130 (C2H98_18110) - 3746033..3747196 (-) 1164 WP_095332598.1 MFS transporter -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64927.80 Da        Isoelectric Point: 6.2076

>NTDB_id=265409 C2H98_RS18110 WP_123260337.1 3740646..3742403(+) (rcrP) [Niallia circulans strain PK3_138]
MINIFKNFQKKDWMFISCALVFIILQVWLDLKLPDYMSEITRLVQTEGSELSDVLAQGGFMMLCAIGSMVASIITVFFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSGFSTASLITRSTNDIMQVQMLIILSLQIVIKAPIIAVWGILKITGKSWEWTAA
TGVAIAVLLVLIATIVLVALPKFKVIQKLTDNLNMVTREHLNGIRVVHAYNAANYHEEKFEKANKELTDTNLFTSRIMAL
MMPTISLIMSGMTLAIYWIGAVLINNAAMADRLPIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSIKRINEVLNTD
VKIKSGSKTNGDKVGEIEFRDVSFKYPGASDYILRNISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEATEGEILVDGL
NVKNYKLEALRDKIGYVSQKAVMFSGSVSSNITFGEEDKDSVEQTKIQRAVEIAQGKDFIEKMDQQYEATISQGGTNLSG
GQKQRLSIARAIYKDPEVYLFDDSFSALDYKTDRVLRSKLKEEIQDATNIIVAQRIGTIKDADRILVLDKGEVVGMGTHD
ELMVTCDVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=265409 C2H98_RS18110 WP_123260337.1 3740646..3742403(+) (rcrP) [Niallia circulans strain PK3_138]
ATGATAAATATTTTTAAAAACTTTCAAAAAAAGGACTGGATGTTCATTTCATGTGCATTAGTCTTTATTATTTTACAAGT
ATGGCTTGATTTAAAGCTGCCAGATTATATGTCTGAAATCACAAGACTAGTGCAGACAGAGGGAAGTGAGTTAAGCGACG
TTTTAGCTCAAGGTGGATTTATGATGCTTTGTGCGATCGGAAGTATGGTTGCTTCGATTATCACGGTTTTCTTTGCTGCG
AAAGTGGCCGCAGGCTTTTCGAATCGTCTGCGCAAAAAGGTTTTTGATAAGACATTATCTTTTTCAATGGAAGAGCTGTC
TGGTTTTTCAACAGCTAGCTTAATAACTCGTTCGACAAATGATATTATGCAAGTTCAAATGCTGATTATATTAAGCTTAC
AAATTGTTATTAAAGCACCGATCATTGCTGTGTGGGGAATTTTAAAAATTACCGGGAAAAGCTGGGAATGGACCGCTGCT
ACAGGCGTGGCAATTGCGGTGTTATTAGTGCTGATTGCTACGATTGTGCTAGTTGCTCTTCCAAAATTCAAAGTTATCCA
GAAGTTAACGGATAATCTTAACATGGTAACAAGAGAGCATTTAAACGGAATCCGGGTTGTTCATGCTTATAATGCAGCAA
ACTATCATGAGGAAAAATTTGAGAAAGCAAATAAGGAATTAACGGATACAAATTTATTCACTTCTCGAATCATGGCCCTG
ATGATGCCGACGATTTCCCTGATAATGTCGGGGATGACGCTTGCCATCTATTGGATTGGAGCAGTGTTAATCAATAATGC
GGCAATGGCAGACCGCTTGCCGATATTCTCAGACATGGTTGTCTTTTCTTCCTATGCGATGCAAATCATTATGGCGTTTA
TGATGGTTTCCATTACATTTGTTCTTCTTCCTCGTGCGGCAGTTTCGATTAAGAGAATAAACGAAGTCCTGAATACCGAT
GTGAAAATTAAGAGTGGTTCAAAAACAAATGGAGACAAAGTAGGAGAGATTGAATTTCGCGATGTGAGCTTTAAATACCC
TGGAGCGAGTGATTATATTCTCCGAAATATTAGCTTTACTGCTTCTAAAGGGGAGACTGTTGCGATTATTGGTTCTACTG
GGAGCGGAAAAAGTACTCTGTTGAACTTGATACCTCGCTTTATGGAAGCAACCGAGGGCGAAATTTTGGTAGATGGTCTA
AATGTGAAGAATTATAAGCTAGAAGCATTACGAGACAAAATTGGATATGTATCGCAAAAAGCAGTTATGTTCAGTGGCTC
TGTGTCTTCCAACATTACGTTTGGAGAGGAAGATAAGGATTCAGTGGAACAGACAAAAATCCAACGAGCAGTGGAAATTG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATATGAGGCGACGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGACAGAAACAAAGATTATCGATTGCACGTGCCATTTATAAAGATCCAGAAGTCTATTTATTTGATGATTCTTTTTCCGC
GTTAGACTATAAAACAGATCGTGTCCTCCGTTCTAAACTGAAAGAAGAGATCCAAGATGCCACTAATATTATTGTGGCAC
AGCGAATTGGAACGATTAAGGATGCTGACCGCATTCTGGTATTAGATAAAGGCGAAGTAGTTGGAATGGGTACACATGAC
GAATTAATGGTAACTTGCGATGTTTACCAAGAAATTGCTTTATCACAATTATCAAAGGAGGAACTCGAAATTGGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(354-504)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.085

100

0.523

Multiple sequence alignment