Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C2I06_RS20770 Genome accession   NZ_CP026031
Coordinates   4324130..4325086 (+) Length   318 a.a.
NCBI ID   WP_095331088.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_109     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4319130..4330086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I06_RS20750 (C2I06_20720) qoxA 4320104..4321033 (+) 930 WP_095331091.1 cytochrome aa3 quinol oxidase subunit II -
  C2I06_RS20755 (C2I06_20725) qoxB 4321023..4322975 (+) 1953 WP_095331089.1 cytochrome aa3 quinol oxidase subunit I -
  C2I06_RS20760 (C2I06_20730) qoxC 4322975..4323583 (+) 609 WP_047944235.1 cytochrome aa3 quinol oxidase subunit III -
  C2I06_RS20765 (C2I06_20735) qoxD 4323590..4323895 (+) 306 WP_047944233.1 cytochrome aa3 quinol oxidase subunit IV -
  C2I06_RS20770 (C2I06_20740) ceuB 4324130..4325086 (+) 957 WP_095331088.1 ABC transporter permease Machinery gene
  C2I06_RS20775 (C2I06_20745) - 4325076..4326029 (+) 954 WP_123259195.1 iron chelate uptake ABC transporter family permease subunit -
  C2I06_RS20780 (C2I06_20750) - 4326023..4326781 (+) 759 WP_123258772.1 ABC transporter ATP-binding protein -
  C2I06_RS20785 (C2I06_20755) - 4327068..4328018 (+) 951 WP_095331085.1 siderophore ABC transporter substrate-binding protein -
  C2I06_RS20790 (C2I06_20760) - 4328187..4329179 (+) 993 WP_095331083.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35203.54 Da        Isoelectric Point: 9.7763

>NTDB_id=265365 C2I06_RS20770 WP_095331088.1 4324130..4325086(+) (ceuB) [Niallia circulans strain PK3_109]
MKIRHLTIMLIVLSIISLFVGVIDIHPQNIFHLTADQREILLISRFPRLVSIIIAGVSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILVALMLFTGESPIIKMLIAFVFALGGTFLFMRILNMIKFKDAIFIPLIGLMLGNIVSSITTFFAMKYDLI
QNMSSWLQGDFSLIMEGRYELLYISIPMVIVAYLYANKFTIAGLGEDFSTNLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGAVFVLFCDILGRVIIYPYEISIGVMVGVIGSGGFLYLLVRRKSYDAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=265365 C2I06_RS20770 WP_095331088.1 4324130..4325086(+) (ceuB) [Niallia circulans strain PK3_109]
ATGAAAATTAGACACTTAACTATAATGTTAATAGTTTTATCTATCATCTCCCTATTTGTAGGAGTAATTGATATTCATCC
ACAAAATATTTTTCATTTAACAGCAGATCAGAGAGAAATTCTCTTGATTAGCAGATTTCCTCGCTTAGTCAGTATTATTA
TAGCTGGTGTTAGTCTAAGTATTTGTGGCCTTATCATGCAGCAGATATCGAGGAATAAATTTGTTTCTCCTACAACTGCT
GGAACAATGGACTGGGCGAGACTTGGGATATTAGTAGCTTTAATGCTTTTTACAGGCGAGAGCCCGATTATTAAAATGTT
AATCGCTTTTGTGTTTGCACTCGGAGGAACCTTTTTGTTTATGCGAATACTTAATATGATTAAATTTAAAGATGCTATCT
TTATTCCATTGATTGGTTTAATGCTAGGGAATATTGTTAGCTCGATTACCACTTTTTTTGCAATGAAATATGATTTGATT
CAAAATATGTCTTCATGGTTACAAGGTGATTTTTCTTTAATCATGGAAGGGCGTTATGAACTTCTTTACATAAGTATTCC
GATGGTTATTGTTGCATACTTATATGCAAATAAATTTACAATTGCTGGATTGGGTGAGGATTTTTCTACTAATCTTGGTC
TCAATCACAAAAGAGTAGTGAATATAGGGTTAATTATCGTAGCGTTAGTTTCTTCTGTTGTATTGCTGACAGTAGGAATG
ATTCCTTTTCTAGGTCTAATCATTCCCAATATCGTTTCGTTATACAGAGGAGATAATTTGAAAAATAGCTTGACCCATAC
AGCATTATTAGGAGCAGTCTTTGTATTATTCTGTGATATTCTTGGAAGAGTGATTATTTATCCGTATGAGATATCGATCG
GTGTGATGGTGGGAGTCATCGGAAGTGGAGGATTCTTGTATTTACTAGTAAGGAGAAAGTCTTATGATGCAACCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.381

99.057

0.519

Multiple sequence alignment