Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C2I06_RS16285 Genome accession   NZ_CP026031
Coordinates   3399579..3401336 (-) Length   585 a.a.
NCBI ID   WP_123258456.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_109     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3394579..3406336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I06_RS16265 (C2I06_16240) - 3394787..3395950 (+) 1164 WP_095332598.1 MFS transporter -
  C2I06_RS16270 (C2I06_16245) - 3395971..3396819 (+) 849 WP_164463726.1 MerR family transcriptional regulator -
  C2I06_RS16275 (C2I06_16250) - 3397164..3397667 (-) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2I06_RS16280 (C2I06_16255) rcrQ 3397745..3399586 (-) 1842 WP_420845917.1 ABC transporter ATP-binding protein Regulator
  C2I06_RS16285 (C2I06_16260) rcrP 3399579..3401336 (-) 1758 WP_123258456.1 ABC transporter ATP-binding protein Regulator
  C2I06_RS16290 (C2I06_16265) - 3401491..3402048 (-) 558 WP_123258457.1 thioredoxin family protein -
  C2I06_RS16295 (C2I06_16270) - 3402215..3403279 (+) 1065 WP_123258458.1 hypothetical protein -
  C2I06_RS16300 (C2I06_16275) - 3403767..3403955 (-) 189 WP_123258459.1 hypothetical protein -
  C2I06_RS16305 (C2I06_16280) - 3404099..3405433 (-) 1335 WP_123258460.1 sulfatase family protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64939.86 Da        Isoelectric Point: 6.2076

>NTDB_id=265347 C2I06_RS16285 WP_123258456.1 3399579..3401336(-) (rcrP) [Niallia circulans strain PK3_109]
MINIFKNFQKKDWMFISCALVFIILQVWLDLKLPDYMSEITRLVQTEGSELSDVLAQGGFMMLCAIGSMVASIITVFFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSGFSTASLITRSTNDIMQVQMLIILSLQIVIKAPIIAVWGILKITGKSWEWTAA
TGVAIAVLLVLIATIVLVALPKFKVIQKLTDNLNMVTREHLNGIRVVHAYNAANYHEEKFEKANKELTDTNLFTSRIMAL
MMPTISLIMSGMTLAIYWIGAVLINNAAMADRLPIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSIKRINEVLNTD
VKIKSGSKTNGDKVGEIEFRDVSFKYPGASDYILRNISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEATEGEILVDGL
NVKNYKLEALRDKIGYVSQKAVMFSGSVSSNITFGEEDKDSVEQIKIQRAVEIAQGKDFIEKMDQQYEATISQGGTNLSG
GQKQRLSIARAIYKDPEVYLFDDSFSALDYKTDRVLRSKLKEEIQDATNIIVAQRIGTIKDADRILVLDKGEVVGMGTHD
ELMVTCDVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=265347 C2I06_RS16285 WP_123258456.1 3399579..3401336(-) (rcrP) [Niallia circulans strain PK3_109]
ATGATAAATATTTTTAAAAACTTTCAAAAAAAGGACTGGATGTTCATTTCATGTGCATTAGTCTTTATTATTTTACAAGT
ATGGCTTGATTTAAAGCTGCCAGATTATATGTCTGAAATCACAAGACTAGTGCAGACAGAGGGAAGTGAGTTAAGCGACG
TTTTAGCTCAAGGTGGATTTATGATGCTTTGTGCGATCGGAAGTATGGTTGCTTCGATTATCACGGTTTTCTTTGCTGCG
AAAGTGGCCGCAGGCTTTTCGAATCGTCTGCGCAAAAAGGTTTTTGATAAGACATTATCTTTTTCGATGGAAGAGCTGTC
TGGTTTTTCAACAGCTAGCTTAATAACTCGTTCGACAAATGATATTATGCAAGTTCAAATGCTGATTATATTAAGCTTAC
AAATTGTTATTAAAGCACCGATCATTGCCGTGTGGGGAATTTTAAAAATTACCGGGAAAAGCTGGGAATGGACCGCTGCT
ACAGGCGTGGCAATTGCGGTGTTATTAGTGCTGATTGCTACGATTGTGCTAGTTGCTCTTCCAAAATTCAAAGTTATCCA
GAAGTTAACGGATAATCTTAACATGGTAACAAGAGAGCATTTAAACGGAATCCGGGTTGTTCATGCTTATAATGCAGCAA
ACTATCATGAGGAAAAATTTGAGAAAGCAAATAAGGAATTAACGGATACAAATTTATTCACTTCTCGAATCATGGCCCTG
ATGATGCCGACGATTTCCCTGATAATGTCGGGGATGACGCTTGCCATCTATTGGATTGGAGCAGTGTTAATCAATAATGC
GGCAATGGCAGACCGCTTGCCGATATTCTCAGACATGGTTGTCTTTTCTTCCTATGCGATGCAAATCATTATGGCGTTTA
TGATGGTTTCCATTACATTTGTTCTTCTTCCTCGTGCGGCAGTTTCGATTAAGAGAATAAACGAAGTCCTGAATACCGAT
GTGAAAATTAAGAGTGGTTCAAAAACAAATGGAGACAAAGTAGGAGAGATTGAATTTCGCGATGTGAGCTTTAAATACCC
TGGAGCGAGTGATTATATTCTCCGAAATATTAGCTTTACTGCTTCTAAAGGGGAGACTGTTGCGATTATTGGTTCTACTG
GGAGCGGAAAAAGTACTCTGTTGAACTTGATACCTCGCTTTATGGAAGCAACCGAGGGCGAAATTTTGGTAGATGGTCTA
AATGTGAAGAATTATAAGCTAGAAGCATTACGAGACAAAATTGGATATGTATCGCAAAAAGCAGTTATGTTCAGTGGCTC
TGTGTCTTCCAACATTACGTTTGGAGAGGAAGATAAGGATTCAGTGGAACAGATAAAAATCCAACGAGCAGTGGAAATTG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATATGAGGCGACGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGACAGAAACAAAGATTATCGATTGCACGTGCCATTTATAAAGATCCAGAAGTCTATTTATTTGATGATTCTTTTTCCGC
GTTAGACTATAAAACAGATCGTGTCCTCCGTTCTAAACTGAAAGAAGAGATCCAAGATGCCACTAATATTATTGTGGCAC
AGCGAATTGGAACGATTAAGGATGCTGACCGCATTCTGGTATTAGATAAAGGCGAAGTAGTTGGAATGGGGACACATGAC
GAATTAATGGTAACTTGCGATGTTTACCAAGAAATTGCTTTATCACAATTATCAAAGGAGGAACTCGAAATTGGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(354-504)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.085

100

0.523

Multiple sequence alignment