Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C2I06_RS16280 Genome accession   NZ_CP026031
Coordinates   3397745..3399586 (-) Length   613 a.a.
NCBI ID   WP_420845917.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_109     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3392745..3404586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I06_RS16260 (C2I06_16235) - 3393915..3394601 (-) 687 WP_123258454.1 response regulator transcription factor -
  C2I06_RS16265 (C2I06_16240) - 3394787..3395950 (+) 1164 WP_095332598.1 MFS transporter -
  C2I06_RS16270 (C2I06_16245) - 3395971..3396819 (+) 849 WP_164463726.1 MerR family transcriptional regulator -
  C2I06_RS16275 (C2I06_16250) - 3397164..3397667 (-) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2I06_RS16280 (C2I06_16255) rcrQ 3397745..3399586 (-) 1842 WP_420845917.1 ABC transporter ATP-binding protein Regulator
  C2I06_RS16285 (C2I06_16260) rcrP 3399579..3401336 (-) 1758 WP_123258456.1 ABC transporter ATP-binding protein Regulator
  C2I06_RS16290 (C2I06_16265) - 3401491..3402048 (-) 558 WP_123258457.1 thioredoxin family protein -
  C2I06_RS16295 (C2I06_16270) - 3402215..3403279 (+) 1065 WP_123258458.1 hypothetical protein -
  C2I06_RS16300 (C2I06_16275) - 3403767..3403955 (-) 189 WP_123258459.1 hypothetical protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68197.95 Da        Isoelectric Point: 5.0181

>NTDB_id=265346 C2I06_RS16280 WP_420845917.1 3397745..3399586(-) (rcrQ) [Niallia circulans strain PK3_109]
MAKKNEVKEEKNPTQNEELGNQPAKSIPPRAKGMNFSSLKQLVIYCKAYFPIIIFALILAMTAAIFSIIGPDQLSKMTDY
ITAGLMGDIDLDAVYDVAILLVFLYGLGFIFNYVQGYIMATVTQRISKQLRRDISVKINRLPLKYFDNTTTGDVLSRVTN
DVDMVGQTMNQSISSLITAITMFVGSLIMMFYTNWIMAIAAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHIEEI
YSGHNVVKAYNAEQQAKDDFFAINTRLYESAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGHISFGVIVAFMLY
IRLFTQPLQQIAQAATNLQSTAAASGRVFEFLSEEELAVEEEKTAKLANIKGDVEFKHVRFGYSEDKTIIEDFSVQVAAG
QKVAIVGPTGAGKTTLINLLMRFYEINGGEITIDGIPTNEMTREALHELFCMVLQDTWIFEGSIRDNIVYSREGVSDEEV
EAACKAVGLHHFIKTLPNGYDTILDDKTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQTAMDKLTEGKT
SFVIAHRLSTIKNADLILVMKDGDIIEAGTHKELIEKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=265346 C2I06_RS16280 WP_420845917.1 3397745..3399586(-) (rcrQ) [Niallia circulans strain PK3_109]
TTGGCTAAGAAAAACGAAGTAAAAGAAGAGAAAAATCCAACCCAAAATGAGGAGTTGGGGAACCAACCAGCAAAATCGAT
TCCTCCGCGTGCAAAAGGGATGAATTTTTCCAGTTTAAAGCAGCTGGTAATTTACTGTAAAGCTTACTTTCCGATTATCA
TCTTTGCTTTAATTCTGGCGATGACAGCGGCAATTTTTAGCATTATCGGTCCTGATCAGCTAAGCAAAATGACGGATTAT
ATTACAGCAGGACTGATGGGAGACATTGATCTAGATGCTGTATATGATGTAGCGATTCTGTTGGTGTTCCTATACGGTTT
AGGCTTTATTTTTAACTATGTGCAAGGCTATATTATGGCAACTGTCACCCAGAGAATTTCAAAACAATTAAGAAGAGACA
TTTCGGTAAAAATTAACCGTCTGCCTTTAAAGTATTTTGATAATACAACAACAGGTGATGTCCTTAGCCGGGTTACAAAT
GATGTCGATATGGTGGGACAGACGATGAACCAAAGTATTAGCAGCTTAATTACGGCTATTACTATGTTCGTCGGTTCCTT
AATCATGATGTTCTACACCAACTGGATTATGGCAATTGCAGCTATTCTTTCCACCTTTATTGGTTTTGCGTTTATGTTCT
TTATTATTTCGAAATCACAGAAATACTTCGCTCAACAGCAGCAAGAGCTTGGAAAATTAAATGGTCATATTGAAGAAATC
TATTCTGGCCATAATGTCGTGAAAGCTTATAATGCAGAGCAGCAGGCGAAGGATGACTTTTTTGCTATCAATACACGATT
ATATGAGAGTGCGTGGAAATCGCAATTTATGTCAGGGCTGATGATGCCATTAATGATGTTTATTGGAAACTTTGGTTATG
TGGTTGTATGTATTGTCGGGGCTGCTCTTGCTGTAAATGGCCATATTTCATTTGGTGTTATTGTTGCCTTTATGCTGTAC
ATTCGCTTATTTACACAGCCGCTGCAACAAATTGCGCAAGCAGCGACAAATCTGCAATCCACAGCAGCAGCAAGTGGGCG
TGTGTTTGAGTTCTTGTCCGAAGAAGAACTAGCAGTAGAAGAGGAGAAAACAGCAAAATTGGCAAATATCAAAGGTGATG
TGGAATTTAAGCATGTCCGCTTTGGCTACAGTGAAGATAAAACAATCATTGAAGACTTTTCCGTACAAGTAGCCGCTGGC
CAGAAGGTCGCAATCGTAGGACCGACTGGCGCTGGAAAAACAACATTAATTAATTTGCTGATGCGCTTTTATGAAATAAA
TGGCGGCGAGATCACAATTGACGGGATTCCAACCAACGAAATGACAAGAGAGGCCCTGCATGAGCTTTTCTGTATGGTGC
TGCAAGATACTTGGATATTTGAAGGGTCTATTCGCGACAATATCGTCTATTCAAGAGAAGGAGTATCAGATGAAGAGGTA
GAAGCTGCCTGCAAAGCAGTTGGCTTGCATCATTTTATCAAAACATTGCCAAACGGCTATGATACTATCTTGGATGACAA
AACAAGTTTATCAGCAGGTCAAAAACAGCTTATCACCATCGCACGTGCCATGGTAAAAATGGCGCCATTACTTATCCTAG
ATGAAGCGACTAGCTCCGTGGATACCCGTACGGAATTACTGATTCAAACAGCAATGGATAAGCTGACAGAAGGAAAAACT
TCCTTTGTGATCGCCCATAGACTTTCAACAATTAAAAATGCCGATTTAATACTTGTCATGAAAGACGGCGATATTATCGA
AGCCGGAACACATAAAGAATTAATCGAGAAAAATGGATTTTATGCTGAGCTTTATAATAGCCAGTTTGAAGAAGCATCGT
AA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-328)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.609

93.801

0.55

Multiple sequence alignment