Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXE49_RS10510 Genome accession   NZ_CP031355
Coordinates   2023898..2024374 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM8995-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018898..2029374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE49_RS10475 (DXE49_10780) - 2019063..2019968 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  DXE49_RS10480 (DXE49_10785) - 2019965..2021035 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  DXE49_RS10490 (DXE49_10790) - 2021171..2021853 (+) 683 Protein_1990 hypothetical protein -
  DXE49_RS10495 (DXE49_10795) - 2021869..2022279 (+) 411 WP_000846713.1 hypothetical protein -
  DXE49_RS10500 (DXE49_10805) - 2022500..2023321 (+) 822 WP_025380451.1 DUF932 domain-containing protein -
  DXE49_RS10505 (DXE49_10810) - 2023403..2023882 (+) 480 WP_000860076.1 antirestriction protein -
  DXE49_RS10510 (DXE49_10815) radC 2023898..2024374 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  DXE49_RS10515 (DXE49_10820) - 2024437..2024658 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DXE49_RS10520 (DXE49_10825) cbeA 2024732..2025100 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DXE49_RS10525 (DXE49_10830) cbtA 2025189..2025562 (+) 374 Protein_1997 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DXE49_RS10530 (DXE49_10835) yeeW 2025559..2025753 (+) 195 WP_000988600.1 DUF5983 family protein -
  DXE49_RS10535 (DXE49_10840) - 2025799..2025879 (+) 81 Protein_1999 hypothetical protein -
  DXE49_RS28025 (DXE49_10850) - 2027530..2027655 (-) 126 WP_352562283.1 transposase domain-containing protein -
  DXE49_RS10550 (DXE49_10855) - 2027682..2027864 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DXE49_RS10555 (DXE49_10860) tmaR 2027965..2028294 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=265341 DXE49_RS10510 WP_001186773.1 2023898..2024374(+) (radC) [Escherichia coli O145 strain RM8995-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=265341 DXE49_RS10510 WP_001186773.1 2023898..2024374(+) (radC) [Escherichia coli O145 strain RM8995-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392