Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C2I06_RS09065 Genome accession   NZ_CP026031
Coordinates   1879332..1881020 (-) Length   562 a.a.
NCBI ID   WP_123257905.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1874332..1886020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I06_RS09045 (C2I06_09040) - 1874874..1875347 (+) 474 WP_123257903.1 hypothetical protein -
  C2I06_RS09050 (C2I06_09045) spo0A 1875593..1876375 (-) 783 WP_047941117.1 sporulation transcription factor Spo0A -
  C2I06_RS09055 (C2I06_09050) - 1876851..1877765 (+) 915 WP_123257904.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  C2I06_RS09060 (C2I06_09055) spoIVB 1877829..1879121 (-) 1293 WP_095332867.1 SpoIVB peptidase -
  C2I06_RS09065 (C2I06_09060) recN 1879332..1881020 (-) 1689 WP_123257905.1 DNA repair protein RecN Machinery gene
  C2I06_RS09070 (C2I06_09065) ahrC 1881037..1881486 (-) 450 WP_047941121.1 transcriptional regulator AhrC/ArgR -
  C2I06_RS09075 (C2I06_09070) - 1881780..1882610 (-) 831 WP_095332863.1 TlyA family RNA methyltransferase -
  C2I06_RS09080 (C2I06_09075) dxs 1882618..1884510 (-) 1893 WP_095332861.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C2I06_RS09085 (C2I06_09080) - 1884948..1885841 (-) 894 WP_095332859.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63495.62 Da        Isoelectric Point: 4.9259

>NTDB_id=265332 C2I06_RS09065 WP_123257905.1 1879332..1881020(-) (recN) [Niallia circulans strain PK3_109]
MLSELSIKNFAIIESLSISFKKGLTVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIEDGHPCFQKM
NEFGIDIDEGAIVLRRDIALSGKSVCRINGKLITIAVLREIGSTLIDIHGQHEHQELMDETKHLQLLDTFAMGELAPVLE
EYEEIYRSYTQTQKKLMNLTENEQQMAQRLDLLQFQFNEIEGAHLKINEDDELLEERKKLSNFEKIYDSIQTGYTALRGE
QKGLDWLGEVMGNMEEAASLDTEYKEMAESVSNSYYILEDIARQMRSALDYLEYDPERLNEIETRLNEINTLKRKYGKTV
AEILEYAAKIEEELETLQNKETHIDLLERELASLKKDLLVEAKELTALRKRAALRLTDSIHQELKELYMEKTVFEVRIHA
DENNVTKKGIDEVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIHH
VSVDSQVLCISHLPQVAAMADTHLFIAKKIEDGRTSTSVTPLVQQDKVKEIGRMISGAEITELTKKHAKELLKLAQKAKN
KI

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=265332 C2I06_RS09065 WP_123257905.1 1879332..1881020(-) (recN) [Niallia circulans strain PK3_109]
TTGCTAAGTGAATTATCGATTAAAAATTTTGCAATCATTGAAAGTCTATCCATATCCTTTAAAAAGGGGCTGACTGTATT
AACTGGTGAAACGGGCGCAGGAAAGTCTATCATTATTGATGCAATCAATTTATTAGTTGGCGGCCGCGGTTCGGCGGAAT
TTGTTCGGCATGGAGAAGAAAAAGCAGAAATAGAAGGGCTATTTTATATAGAAGACGGTCATCCCTGTTTTCAAAAAATG
AATGAGTTTGGTATCGATATAGATGAGGGTGCTATTGTATTAAGAAGAGATATTGCTTTATCTGGTAAGAGTGTCTGCCG
GATAAATGGCAAGCTTATCACAATCGCCGTATTAAGAGAAATAGGTTCCACTTTAATTGATATTCACGGTCAGCATGAAC
ATCAAGAATTAATGGATGAAACAAAGCATTTACAGTTGCTGGATACTTTTGCAATGGGAGAATTAGCTCCTGTTTTAGAA
GAATATGAAGAAATTTATCGATCTTATACACAAACTCAAAAGAAACTTATGAATTTAACAGAAAATGAACAGCAAATGGC
CCAACGACTTGATTTACTACAGTTTCAGTTCAATGAAATTGAAGGTGCTCATTTGAAAATCAACGAAGATGATGAACTGT
TAGAAGAAAGAAAGAAATTAAGCAATTTCGAGAAAATTTATGATAGCATACAAACAGGTTATACTGCCCTAAGAGGAGAA
CAAAAGGGGCTGGACTGGCTTGGCGAGGTTATGGGAAATATGGAGGAAGCTGCAAGCTTAGACACCGAATATAAGGAAAT
GGCTGAATCTGTCTCCAATAGCTATTATATTTTAGAGGATATTGCAAGACAGATGAGAAGCGCTTTAGATTACCTGGAAT
ATGATCCCGAAAGGCTTAATGAGATTGAAACAAGACTGAATGAAATCAATACCTTAAAACGTAAATATGGAAAAACAGTA
GCAGAGATTTTAGAGTATGCTGCGAAAATCGAGGAAGAATTAGAAACATTACAAAACAAAGAAACGCATATCGATTTGTT
GGAAAGGGAGTTAGCCTCTCTTAAGAAAGATCTTTTAGTGGAAGCAAAGGAATTGACTGCCTTAAGAAAGAGAGCGGCTC
TTCGTCTCACAGATAGTATTCATCAAGAATTAAAAGAACTCTACATGGAAAAGACTGTTTTTGAAGTAAGAATTCATGCA
GATGAGAATAATGTTACGAAAAAAGGGATAGACGAAGTGGAATTTTACATTTCTACAAATCCTGGAGAACCATTAAAACC
ACTATCCAAAATTGTTTCCGGTGGAGAGCTTTCCAGAATGATGCTAGCTTTAAAAAGCATTTTCTCTAAGCATCAAGGAG
TGACATCCATCATATTTGATGAGGTTGATACCGGTGTGAGTGGAAGAGTAGCACAAGCAATCGCTGAGAAAATCCACCAT
GTGTCGGTTGATTCTCAAGTGCTCTGTATTTCCCATCTGCCGCAGGTGGCAGCAATGGCAGATACCCATCTATTTATCGC
TAAAAAAATTGAAGATGGCCGCACATCTACGTCTGTAACACCATTAGTGCAGCAAGATAAGGTAAAAGAGATAGGACGAA
TGATTTCAGGAGCGGAAATTACGGAATTAACAAAAAAACATGCAAAAGAACTGTTAAAATTAGCGCAAAAAGCTAAGAAT
AAAATATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.641

Multiple sequence alignment