Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H91_RS19725 Genome accession   NZ_CP026030
Coordinates   3901470..3902090 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3896470..3907090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS19705 (C2H91_19720) dnaD 3896749..3897447 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C2H91_RS19710 (C2H91_19725) nth 3897466..3898125 (+) 660 WP_009967580.1 endonuclease III -
  C2H91_RS19715 (C2H91_19730) ypoC 3898122..3898616 (+) 495 WP_032726025.1 YpoC family protein -
  C2H91_RS19720 (C2H91_19735) ponA 3898692..3901448 (-) 2757 WP_032726024.1 PBP1A family penicillin-binding protein -
  C2H91_RS19725 (C2H91_19740) recU 3901470..3902090 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C2H91_RS19730 (C2H91_19745) yppC 3902131..3903093 (+) 963 WP_134991240.1 DUF2515 domain-containing protein -
  C2H91_RS19735 (C2H91_19750) sspM 3903118..3903222 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H91_RS19740 (C2H91_19755) yppD 3903421..3903666 (+) 246 WP_021481526.1 DUF5446 family protein -
  C2H91_RS19745 (C2H91_19760) yppE 3903712..3904083 (+) 372 WP_021481525.1 YppE family protein -
  C2H91_RS19750 (C2H91_19765) yppF 3904122..3904310 (-) 189 WP_003230690.1 YppF family protein -
  C2H91_RS19755 (C2H91_19770) yppG 3904498..3904875 (+) 378 WP_015251832.1 YppG family protein -
  C2H91_RS19760 (C2H91_19775) ypqA 3904896..3905315 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  C2H91_RS19765 (C2H91_19780) ypqE 3905453..3905959 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265315 C2H91_RS19725 WP_004399067.1 3901470..3902090(-) (recU) [Bacillus subtilis strain PK3_9]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265315 C2H91_RS19725 WP_004399067.1 3901470..3902090(-) (recU) [Bacillus subtilis strain PK3_9]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGCAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment