Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   C2H91_RS18515 Genome accession   NZ_CP026030
Coordinates   3687306..3687689 (+) Length   127 a.a.
NCBI ID   WP_032726158.1    Uniprot ID   A0AAX3RJE0
Organism   Bacillus subtilis strain PK3_9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3682306..3692689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS18480 (C2H91_18500) corA 3682761..3683714 (+) 954 WP_072173930.1 magnesium transporter CorA -
  C2H91_RS18485 (C2H91_18505) - 3683716..3683913 (+) 198 WP_249850938.1 hypothetical protein -
  C2H91_RS18490 (C2H91_18510) comGA 3684124..3685194 (+) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  C2H91_RS18495 (C2H91_18515) comGB 3685181..3686218 (+) 1038 WP_086344083.1 comG operon protein ComGB Machinery gene
  C2H91_RS18500 (C2H91_18520) comGC 3686232..3686528 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  C2H91_RS18505 (C2H91_18525) comGD 3686518..3686949 (+) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  C2H91_RS18510 (C2H91_18530) comGE 3686933..3687280 (+) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  C2H91_RS18515 (C2H91_18535) comGF 3687306..3687689 (+) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  C2H91_RS18520 (C2H91_18540) comGG 3687690..3688064 (+) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  C2H91_RS18525 (C2H91_18545) spoIIT 3688136..3688315 (+) 180 WP_014480252.1 YqzE family protein -
  C2H91_RS18530 (C2H91_18550) yqzG 3688357..3688683 (-) 327 WP_038829733.1 YqzG/YhdC family protein -
  C2H91_RS18535 (C2H91_18555) tapA 3688954..3689715 (+) 762 WP_077671431.1 amyloid fiber anchoring/assembly protein TapA -
  C2H91_RS18540 (C2H91_18560) sipW 3689699..3690271 (+) 573 WP_003246088.1 signal peptidase I -
  C2H91_RS18545 (C2H91_18565) tasA 3690336..3691121 (+) 786 WP_014477324.1 biofilm matrix protein TasA -
  C2H91_RS18550 (C2H91_18570) sinR 3691214..3691549 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C2H91_RS18555 (C2H91_18575) sinI 3691583..3691756 (-) 174 WP_014477323.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14315.39 Da        Isoelectric Point: 5.8929

>NTDB_id=265309 C2H91_RS18515 WP_032726158.1 3687306..3687689(+) (comGF) [Bacillus subtilis strain PK3_9]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=265309 C2H91_RS18515 WP_032726158.1 3687306..3687689(+) (comGF) [Bacillus subtilis strain PK3_9]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992

Multiple sequence alignment