Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXE50_RS12420 Genome accession   NZ_CP031353
Coordinates   2176102..2176578 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM9154-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171102..2181578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE50_RS12370 (DXE50_12840) sbmC 2171595..2172068 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  DXE50_RS12375 (DXE50_12845) yeeA 2172266..2173324 (+) 1059 WP_001200905.1 FUSC family protein -
  DXE50_RS12380 (DXE50_12850) tmaR 2173496..2173825 (+) 330 WP_000450409.1 DUF496 family protein -
  DXE50_RS12385 (DXE50_12855) - 2173926..2174108 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DXE50_RS27565 - 2174228..2174308 (+) 81 WP_023441679.1 hypothetical protein -
  DXE50_RS12395 (DXE50_12865) - 2174597..2174677 (-) 81 Protein_2051 hypothetical protein -
  DXE50_RS12400 (DXE50_12870) yeeW 2174723..2174917 (-) 195 WP_000988600.1 DUF5983 family protein -
  DXE50_RS12405 (DXE50_12875) cbtA 2174914..2175287 (-) 374 Protein_2053 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DXE50_RS12410 (DXE50_12880) cbeA 2175376..2175744 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DXE50_RS12415 (DXE50_12885) yeeT 2175818..2176039 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DXE50_RS12420 (DXE50_12890) radC 2176102..2176578 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  DXE50_RS12425 (DXE50_12895) - 2176594..2177073 (-) 480 WP_000860076.1 antirestriction protein -
  DXE50_RS12430 (DXE50_12900) - 2177155..2177976 (-) 822 WP_025380451.1 DUF932 domain-containing protein -
  DXE50_RS12435 (DXE50_12910) - 2178197..2178607 (-) 411 WP_000846713.1 hypothetical protein -
  DXE50_RS12440 (DXE50_12915) - 2178623..2179306 (-) 684 WP_016239564.1 hypothetical protein -
  DXE50_RS12445 (DXE50_12920) - 2179442..2180512 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  DXE50_RS12450 (DXE50_12925) - 2180509..2181414 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=265268 DXE50_RS12420 WP_001186773.1 2176102..2176578(-) (radC) [Escherichia coli O145 strain RM9154-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=265268 DXE50_RS12420 WP_001186773.1 2176102..2176578(-) (radC) [Escherichia coli O145 strain RM9154-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392