Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   C2H91_RS08230 Genome accession   NZ_CP026030
Coordinates   1694452..1694850 (+) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 1689452..1699850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS08205 (C2H91_08195) hxlR 1690194..1690556 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C2H91_RS08210 (C2H91_08200) hxlA 1690787..1691419 (+) 633 WP_021481819.1 3-hexulose-6-phosphate synthase -
  C2H91_RS08215 (C2H91_08205) hxlB 1691425..1691982 (+) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  C2H91_RS08220 (C2H91_08210) tlpC 1692087..1693808 (+) 1722 WP_249851259.1 methyl-accepting chemotaxis protein TlpC -
  C2H91_RS08225 (C2H91_08215) nucA/comI 1693976..1694425 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  C2H91_RS08230 (C2H91_08220) nin/comJ 1694452..1694850 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  C2H91_RS08235 (C2H91_08225) bglC 1694887..1696320 (-) 1434 WP_072175231.1 6-phospho-beta-glucosidase -
  C2H91_RS08240 (C2H91_08230) - 1696393..1697121 (-) 729 WP_021481826.1 AAA family ATPase -
  C2H91_RS08245 (C2H91_08235) - 1697140..1697481 (-) 342 WP_032724911.1 DUF3147 family protein -
  C2H91_RS08250 (C2H91_08240) - 1697469..1697891 (-) 423 WP_170939093.1 MarR family transcriptional regulator -
  C2H91_RS08255 (C2H91_08245) yckD 1698017..1698349 (-) 333 WP_249851260.1 YckD family protein -
  C2H91_RS08260 (C2H91_08250) yckC 1698432..1698887 (-) 456 WP_249851261.1 RDD family protein -
  C2H91_RS08265 - 1698907..1699104 (-) 198 WP_139026565.1 hypothetical protein -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=265267 C2H91_RS08230 WP_021481824.1 1694452..1694850(+) (nin/comJ) [Bacillus subtilis strain PK3_9]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=265267 C2H91_RS08230 WP_021481824.1 1694452..1694850(+) (nin/comJ) [Bacillus subtilis strain PK3_9]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992


Multiple sequence alignment