Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DXE50_RS12360 Genome accession   NZ_CP031353
Coordinates   2168674..2170101 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM9154-C1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2163674..2175101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE50_RS12330 (DXE50_12800) yeeZ 2163729..2164553 (+) 825 WP_000754755.1 SDR family oxidoreductase -
  DXE50_RS12335 (DXE50_12805) yeeY 2164599..2165528 (+) 930 WP_096846611.1 LysR substrate-binding domain-containing protein -
  DXE50_RS12340 (DXE50_12810) yoeI 2165743..2165805 (+) 63 WP_010723108.1 membrane protein YoeI -
  DXE50_RS12345 (DXE50_12815) plaP 2165795..2167153 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DXE50_RS12350 (DXE50_12820) tsuA 2167332..2168390 (+) 1059 WP_000492332.1 thiosulfate utilization transporter TsuA/YeeE -
  DXE50_RS12355 (DXE50_12825) tsuB 2168404..2168631 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DXE50_RS12360 (DXE50_12830) sbcB 2168674..2170101 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  DXE50_RS12365 (DXE50_12835) dacD 2170310..2171476 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DXE50_RS12370 (DXE50_12840) sbmC 2171595..2172068 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  DXE50_RS12375 (DXE50_12845) yeeA 2172266..2173324 (+) 1059 WP_001200905.1 FUSC family protein -
  DXE50_RS12380 (DXE50_12850) tmaR 2173496..2173825 (+) 330 WP_000450409.1 DUF496 family protein -
  DXE50_RS12385 (DXE50_12855) - 2173926..2174108 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DXE50_RS27565 - 2174228..2174308 (+) 81 WP_023441679.1 hypothetical protein -
  DXE50_RS12395 (DXE50_12865) - 2174597..2174677 (-) 81 Protein_2051 hypothetical protein -
  DXE50_RS12400 (DXE50_12870) yeeW 2174723..2174917 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=265267 DXE50_RS12360 WP_000980539.1 2168674..2170101(-) (sbcB) [Escherichia coli O145 strain RM9154-C1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=265267 DXE50_RS12360 WP_000980539.1 2168674..2170101(-) (sbcB) [Escherichia coli O145 strain RM9154-C1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment