Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C2H91_RS04590 Genome accession   NZ_CP026030
Coordinates   974126..974704 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PK3_9     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 969126..979704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS04555 (C2H91_04535) lepB 969134..969640 (-) 507 WP_043857244.1 signal peptidase I -
  C2H91_RS04560 (C2H91_04540) yhjE 969642..970265 (-) 624 WP_249851149.1 TVP38/TMEM64 family protein -
  C2H91_RS04565 (C2H91_04545) - 970417..970788 (+) 372 WP_014476361.1 hypothetical protein -
  C2H91_RS04570 (C2H91_04550) yhjC 970987..971187 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C2H91_RS04575 (C2H91_04555) yhjB 971184..972653 (+) 1470 WP_249851150.1 sodium:solute symporter -
  C2H91_RS04580 (C2H91_04560) yhjA 972696..972965 (-) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  C2H91_RS04585 (C2H91_04565) yhxD 973182..974081 (+) 900 WP_032725347.1 SDR family oxidoreductase -
  C2H91_RS04590 (C2H91_04570) comK 974126..974704 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C2H91_RS04595 (C2H91_04575) yhzC 974997..975230 (+) 234 WP_249851151.1 IDEAL domain-containing protein -
  C2H91_RS04600 (C2H91_04580) yhxC 975258..976115 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  C2H91_RS04605 (C2H91_04585) yhfW 976227..977756 (+) 1530 WP_249851152.1 FAD-dependent oxidoreductase -
  C2H91_RS04610 (C2H91_04590) hemAT 977895..979193 (+) 1299 WP_032725754.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=265255 C2H91_RS04590 WP_003245329.1 974126..974704(-) (comK) [Bacillus subtilis strain PK3_9]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=265255 C2H91_RS04590 WP_003245329.1 974126..974704(-) (comK) [Bacillus subtilis strain PK3_9]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment