Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DXE50_RS04305 Genome accession   NZ_CP031353
Coordinates   499317..499922 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O145 strain RM9154-C1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494317..504922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE50_RS27790 - 494871..494969 (+) 99 Protein_448 hypothetical protein -
  DXE50_RS04275 (DXE50_04490) rsmS 495022..495183 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DXE50_RS04280 (DXE50_04495) priC 495197..495724 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  DXE50_RS04285 (DXE50_04500) ybaN 495794..496171 (+) 378 WP_001188905.1 DUF454 family protein -
  DXE50_RS04290 (DXE50_04505) apt 496324..496875 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DXE50_RS04295 (DXE50_04510) dnaX 497004..498935 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  DXE50_RS04300 (DXE50_04515) ybaB 498988..499317 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DXE50_RS04305 (DXE50_04520) recR 499317..499922 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DXE50_RS04310 (DXE50_04525) htpG 500032..501906 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  DXE50_RS04315 (DXE50_04530) adk 502087..502731 (+) 645 WP_001220233.1 adenylate kinase -
  DXE50_RS04320 (DXE50_04535) hemH 502863..503825 (+) 963 WP_001250105.1 ferrochelatase -
  DXE50_RS04325 (DXE50_04540) aes 503822..504781 (-) 960 WP_000801812.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=265249 DXE50_RS04305 WP_001195025.1 499317..499922(+) (recR) [Escherichia coli O145 strain RM9154-C1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=265249 DXE50_RS04305 WP_001195025.1 499317..499922(+) (recR) [Escherichia coli O145 strain RM9154-C1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443