Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C2H91_RS01545 Genome accession   NZ_CP026030
Coordinates   381808..382701 (-) Length   297 a.a.
NCBI ID   WP_249851048.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 376808..387701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS01530 (C2H91_01520) xerC 377180..378094 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C2H91_RS01535 (C2H91_01525) trmFO 378162..379469 (-) 1308 WP_249851047.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C2H91_RS01540 (C2H91_01530) topA 379545..381620 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  C2H91_RS01545 (C2H91_01535) dprA 381808..382701 (-) 894 WP_249851048.1 DNA-processing protein DprA Machinery gene
  C2H91_RS01550 (C2H91_01540) sucD 382762..383664 (-) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  C2H91_RS01555 (C2H91_01545) sucC 383693..384850 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  C2H91_RS01560 (C2H91_01550) ylqH 385023..385304 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  C2H91_RS01565 (C2H91_01555) - 385301..387031 (-) 1731 WP_249851049.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32861.20 Da        Isoelectric Point: 9.7057

>NTDB_id=265240 C2H91_RS01545 WP_249851048.1 381808..382701(-) (dprA) [Bacillus subtilis strain PK3_9]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQCVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGPLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=265240 C2H91_RS01545 WP_249851048.1 381808..382701(-) (dprA) [Bacillus subtilis strain PK3_9]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGTGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTCCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment