Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C2I18_RS26765 Genome accession   NZ_CP026029
Coordinates   6139912..6141663 (-) Length   583 a.a.
NCBI ID   WP_249898736.1    Uniprot ID   -
Organism   Paenibacillus sp. PK3_47     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6134912..6146663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I18_RS26750 (C2I18_26680) - 6135749..6136453 (-) 705 WP_249898733.1 response regulator transcription factor -
  C2I18_RS26755 (C2I18_26685) cls 6136621..6138063 (+) 1443 WP_249898734.1 cardiolipin synthase -
  C2I18_RS26760 (C2I18_26690) rcrQ 6138146..6139912 (-) 1767 WP_249898735.1 ABC transporter ATP-binding protein Regulator
  C2I18_RS26765 (C2I18_26695) rcrP 6139912..6141663 (-) 1752 WP_249898736.1 ABC transporter ATP-binding protein Regulator
  C2I18_RS26770 (C2I18_26700) - 6141786..6142859 (-) 1074 WP_249898737.1 HAMP domain-containing sensor histidine kinase -
  C2I18_RS26775 (C2I18_26705) - 6142856..6143530 (-) 675 WP_249898738.1 response regulator transcription factor -
  C2I18_RS26780 (C2I18_26710) - 6143698..6144285 (+) 588 WP_249902263.1 sugar O-acetyltransferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63748.08 Da        Isoelectric Point: 5.7015

>NTDB_id=265235 C2I18_RS26765 WP_249898736.1 6139912..6141663(-) (rcrP) [Paenibacillus sp. PK3_47]
MIKLLKNLTAKEWTLFGISVLFIVAQVWLDLELPDYMADITRLIQTPGSEMSEIIATGSWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFNKVQSFSMEEINSFSTASLITRSTNDIMQVQMLIVIGLQVMVKAPILAVWAVLKITGKSWEWSLA
TGAAVGLLIVIVGICILLVLPKFQKLQQLTDNLNRVARESLTGLRVIRAYNAEKYQEDKFGEANNELTRTNLFAQNVLAT
LMPGITLIMSGLSLAIYWIGAVMIQGADATAKMGLFSDMIVFSSYALQVVMAFMMLIMIFILLPRAQVSAKRINEVLDTR
PSLANGTITSSPSDLVGEVEFKNVSFKYPDAEEYVLQDISFTAKKGETVAFIGSTGCGKSTVVNLIPRFYDATSGEVLVD
GLNVNQYEQSALRNKMGYVSQKAVLFGGTVTSNIAFGDNGRDVTSDVVDAVYTSQASDFVEKMEGSYDAQIAQGGANLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKESRGTTMLIVAQRIGTIKDADKIIVLEAGRIAGMGTHD
ELMQSCSIYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=265235 C2I18_RS26765 WP_249898736.1 6139912..6141663(-) (rcrP) [Paenibacillus sp. PK3_47]
ATGATCAAATTACTTAAGAATCTGACAGCAAAGGAATGGACCTTATTCGGAATCAGCGTCCTCTTCATTGTTGCCCAGGT
ATGGCTGGATCTGGAACTCCCGGATTATATGGCCGACATTACCCGTCTGATCCAGACACCGGGAAGCGAGATGAGCGAGA
TTATTGCCACCGGCAGCTGGATGCTGCTCTGTGCACTGGGAAGCTTAGCCACTTCAATTATAGTAGCAGGTATTGCCGCC
AAAATTGCCGCTAACTTCTCTTCCAGACTCCGTTCCAAGTTGTTCAACAAAGTCCAGTCCTTCTCCATGGAGGAAATCAA
CAGCTTCTCTACGGCCAGCCTGATCACCCGTTCGACAAATGATATTATGCAGGTGCAGATGCTGATTGTCATCGGACTGC
AGGTGATGGTAAAAGCGCCTATCCTCGCGGTGTGGGCGGTGCTCAAGATTACCGGCAAGAGCTGGGAATGGTCGCTCGCA
ACCGGCGCTGCCGTCGGACTGCTGATCGTTATCGTCGGCATCTGTATCCTGCTGGTACTGCCTAAATTCCAGAAGCTGCA
GCAGCTGACAGATAACCTGAACCGTGTAGCGAGGGAGAGCCTTACCGGGCTTCGCGTCATCCGCGCCTATAATGCCGAGA
AATATCAGGAAGATAAATTCGGCGAAGCGAATAATGAACTGACCCGGACCAATCTTTTTGCGCAAAATGTATTAGCCACC
CTCATGCCCGGCATCACTCTCATTATGAGCGGACTGAGTCTGGCGATCTACTGGATCGGTGCAGTCATGATTCAAGGTGC
TGATGCCACTGCAAAAATGGGCTTGTTCTCAGATATGATCGTATTTTCTTCCTATGCCCTGCAGGTCGTCATGGCCTTTA
TGATGCTGATCATGATCTTTATCCTGCTGCCGCGTGCCCAAGTATCCGCGAAAAGAATCAACGAGGTGCTGGATACCCGG
CCAAGCCTGGCCAACGGAACGATTACCTCTTCTCCTTCCGATCTGGTCGGCGAAGTGGAGTTCAAAAATGTCAGCTTCAA
ATATCCGGATGCCGAGGAGTATGTCCTCCAGGATATCAGCTTTACAGCCAAAAAAGGTGAAACTGTTGCCTTCATCGGTT
CAACCGGTTGCGGAAAGAGCACTGTCGTAAATCTGATTCCGCGCTTCTATGATGCCACGTCAGGTGAAGTGCTGGTCGAT
GGCTTGAATGTAAATCAATATGAGCAGAGCGCCCTGCGCAACAAAATGGGTTATGTCTCCCAAAAAGCGGTCCTGTTCGG
CGGTACAGTAACCTCCAATATCGCCTTTGGCGATAACGGCCGGGATGTCACCTCTGATGTAGTGGATGCCGTGTATACCT
CGCAGGCTTCGGATTTTGTCGAGAAAATGGAAGGCAGCTACGACGCGCAAATCGCCCAGGGCGGTGCCAATCTGTCCGGC
GGACAAAAGCAGCGGCTGTCGATTGCCCGGGCGATCGCGCGGCGTCCTGAAATTCTGATTTTCGACGATTCCTTTTCTGC
GCTGGACTATAAAACAGACCGCAAGCTGCGCAGTGAGCTGAAAAAGGAATCCCGCGGAACCACAATGCTTATCGTTGCCC
AGCGGATCGGTACGATCAAAGATGCCGACAAAATTATTGTCCTGGAAGCAGGACGGATCGCGGGTATGGGCACGCATGAT
GAACTGATGCAGTCCTGCAGCATCTATCAGGAAATTGCGTACTCGCAGCTGTCGAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.261

100

0.535

Multiple sequence alignment