Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C2I18_RS26760 Genome accession   NZ_CP026029
Coordinates   6138146..6139912 (-) Length   588 a.a.
NCBI ID   WP_249898735.1    Uniprot ID   -
Organism   Paenibacillus sp. PK3_47     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6133146..6144912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I18_RS26740 (C2I18_26670) - 6133945..6134289 (+) 345 WP_249898731.1 Asp23/Gls24 family envelope stress response protein -
  C2I18_RS26745 (C2I18_26675) - 6134353..6135768 (-) 1416 WP_249898732.1 HAMP domain-containing sensor histidine kinase -
  C2I18_RS26750 (C2I18_26680) - 6135749..6136453 (-) 705 WP_249898733.1 response regulator transcription factor -
  C2I18_RS26755 (C2I18_26685) cls 6136621..6138063 (+) 1443 WP_249898734.1 cardiolipin synthase -
  C2I18_RS26760 (C2I18_26690) rcrQ 6138146..6139912 (-) 1767 WP_249898735.1 ABC transporter ATP-binding protein Regulator
  C2I18_RS26765 (C2I18_26695) rcrP 6139912..6141663 (-) 1752 WP_249898736.1 ABC transporter ATP-binding protein Regulator
  C2I18_RS26770 (C2I18_26700) - 6141786..6142859 (-) 1074 WP_249898737.1 HAMP domain-containing sensor histidine kinase -
  C2I18_RS26775 (C2I18_26705) - 6142856..6143530 (-) 675 WP_249898738.1 response regulator transcription factor -
  C2I18_RS26780 (C2I18_26710) - 6143698..6144285 (+) 588 WP_249902263.1 sugar O-acetyltransferase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64088.87 Da        Isoelectric Point: 5.6838

>NTDB_id=265234 C2I18_RS26760 WP_249898735.1 6138146..6139912(-) (rcrQ) [Paenibacillus sp. PK3_47]
MDTQKNKEQNNTWSKLLNYCRSHIPIILIAVISAAAGTVLTLLGPDKLSEMTDLITEGLAAGIDMDAVTSIGLFLVFIYA
LSAILSLAQGLIMSNVTQKVSRSLRKDLSRKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFIGS
IIMMFKTNVLMTLTAIAATVIGFGLMAAIMKKSQKYFQSQQDFLGKINGHVEEVYTGHTVVKAYNGEAQMRGEFDALNQQ
LKDSAYKAQFLSGLMMPIMTFIGNLGYVAVCVVGAVLAINGSISFGVIVAFIMYVRFFTQPLAQIAQAAQSLQSASAASS
RVFEFLDAEEMENEDSKQSRLATAAGKVEFEHVKFAYEGSDNLVIKDFSARVKPGQKIAIVGPTGAGKTTLINLLIRFNE
LTGGEIYIDDTPVSSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVSDAEIEAACKSVGLHHFIQTLSAGYDTVLN
DKVNLSAGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDI
LESGSHTELLAGNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=265234 C2I18_RS26760 WP_249898735.1 6138146..6139912(-) (rcrQ) [Paenibacillus sp. PK3_47]
ATGGATACCCAAAAGAATAAAGAGCAAAATAACACCTGGAGCAAACTGCTCAATTATTGCCGGAGCCATATTCCCATTAT
TCTGATTGCCGTGATCAGTGCGGCTGCCGGAACCGTATTGACCCTGCTGGGACCGGATAAGCTGTCGGAGATGACCGACC
TGATTACCGAAGGCCTTGCCGCCGGCATCGATATGGACGCAGTCACCTCTATCGGACTCTTTCTGGTCTTCATCTACGCC
TTAAGCGCCATCCTGTCGCTGGCCCAGGGTCTGATTATGTCAAATGTTACGCAGAAGGTCTCCAGAAGCTTGAGAAAAGA
CCTGTCCCGTAAAATGAACAGGCTGCCGATCTCTTACTATAATAAATCTACAACCGGTGATATCCTGTCCCGGGTAACCA
ATGATGTCGATACCATCGGTCAGGCCCTGAACCAAAGTGTCGGAACGCTGGTCACTGCCCTCGCCCTGTTCATCGGATCG
ATCATTATGATGTTCAAAACCAATGTGCTCATGACCCTGACAGCTATTGCAGCTACAGTCATCGGCTTTGGCCTGATGGC
GGCAATTATGAAGAAATCGCAAAAGTATTTCCAGAGCCAGCAGGATTTTCTGGGCAAAATTAACGGTCATGTGGAGGAAG
TCTACACCGGGCACACTGTAGTCAAAGCTTATAATGGCGAAGCGCAAATGCGCGGGGAATTCGATGCCTTGAATCAGCAG
CTGAAGGACAGTGCGTACAAAGCGCAATTCCTCTCCGGTCTTATGATGCCGATCATGACGTTTATCGGTAACCTGGGTTA
TGTGGCCGTCTGCGTCGTCGGTGCGGTGCTGGCCATTAACGGATCGATTTCGTTCGGGGTGATTGTGGCCTTCATCATGT
ACGTCCGTTTCTTCACCCAGCCGCTTGCGCAGATTGCCCAGGCCGCACAGAGTCTGCAATCCGCTTCCGCTGCCAGCAGC
CGGGTATTTGAATTCCTGGATGCCGAGGAAATGGAGAATGAGGACAGCAAGCAGAGCCGGCTGGCAACCGCTGCGGGCAA
AGTGGAATTTGAACATGTAAAGTTTGCTTATGAAGGCTCTGACAATCTTGTGATCAAAGATTTCTCAGCCCGTGTGAAGC
CCGGCCAGAAAATCGCGATCGTCGGTCCAACCGGCGCCGGTAAAACAACGCTGATCAACCTGCTGATCCGCTTCAACGAA
TTAACGGGCGGGGAAATTTACATTGATGATACACCGGTCAGCAGCCTGACGAGAGAGAATATTCATGATCTGTTCTGCAT
GGTGCTGCAGGATACCTGGCTGTTCGAGGGTACGATCAGAGAAAATCTCGTATACAACAAAACAGGCGTAAGCGATGCGG
AAATAGAAGCCGCCTGCAAATCTGTAGGTCTGCACCACTTCATCCAGACGCTTAGCGCAGGTTATGATACGGTCCTGAAT
GATAAAGTCAACTTGTCCGCCGGCCAGAAGCAGCAGCTTACGATTGCCCGGGCCATGCTGAAAAATGCGCCGATGCTCAT
TCTTGATGAAGCGACCAGCTCCGTCGATACAAGAACAGAACTGCTCATTCAGCAGGCTATGGATAAGCTGATGGAAGGAA
GAACCTCCTTCGTTATCGCACACAGACTTTCTACCATTAAGAATGCCGATGTCATCCTAGTGCTTAAGGATGGCGATATT
CTCGAAAGCGGCAGCCATACAGAGCTGCTCGCGGGGAACGGCTTCTATGCCGAGCTGTACAACAGCCAGTTTGAACAGGC
CTCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(366-513)

ABC transporter transmembrane region (ABC_membrane)

(27-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.67

98.98

0.551

Multiple sequence alignment