Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C2I18_RS20330 Genome accession   NZ_CP026029
Coordinates   4654223..4655212 (-) Length   329 a.a.
NCBI ID   WP_249897552.1    Uniprot ID   -
Organism   Paenibacillus sp. PK3_47     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4649223..4660212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I18_RS20310 (C2I18_20210) - 4650534..4651007 (-) 474 WP_249897548.1 hypothetical protein -
  C2I18_RS20315 (C2I18_20215) - 4651468..4652487 (-) 1020 WP_249897549.1 siderophore ABC transporter substrate-binding protein -
  C2I18_RS20320 (C2I18_20220) - 4652519..4653286 (-) 768 WP_249897550.1 ABC transporter ATP-binding protein -
  C2I18_RS20325 (C2I18_20225) - 4653283..4654230 (-) 948 WP_249897551.1 iron chelate uptake ABC transporter family permease subunit -
  C2I18_RS20330 (C2I18_20230) ceuB 4654223..4655212 (-) 990 WP_249897552.1 ABC transporter permease Machinery gene
  C2I18_RS20335 (C2I18_20235) - 4655301..4656875 (-) 1575 WP_249897553.1 helix-turn-helix domain-containing protein -
  C2I18_RS20340 (C2I18_20240) - 4656903..4657088 (-) 186 WP_249897554.1 hypothetical protein -
  C2I18_RS20345 (C2I18_20245) - 4657171..4658058 (-) 888 WP_249897555.1 type II CAAX endopeptidase family protein -
  C2I18_RS20350 (C2I18_20250) - 4658422..4659255 (+) 834 WP_249897556.1 PRD domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36079.36 Da        Isoelectric Point: 10.0058

>NTDB_id=265228 C2I18_RS20330 WP_249897552.1 4654223..4655212(-) (ceuB) [Paenibacillus sp. PK3_47]
MRNESEVTPVSSLFRKRVLAAVLLLLSAVSLFIGARDLSPLDLFSLDESQRQVLLISRLPRLISLIIAGVSMSIVGLMMQ
QLSRNKFVSPTTGGTDDSARLGILVSMLMFGNAAPMQKMLIAFVFALAGTFLFMKLLDRIKLKDAIFIPLVGLMFGNIIS
SVTTFFAYKHDLIQNISSWLQGNFSLVMTGRYELLYLSIPLVIVAYIYADKFTISGMGEEFAVGLGLNYRQVVNIGLIIV
SLVSVVVIITVGTIPFLGLIIPNLVTLVRGDHLKKSLSHTALLGAVFILACDILGRVVIYPYEIPIGLTVGVIGSGIFLY
LLLRRKVYE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=265228 C2I18_RS20330 WP_249897552.1 4654223..4655212(-) (ceuB) [Paenibacillus sp. PK3_47]
ATGAGAAATGAGAGCGAGGTGACCCCCGTTTCCAGCCTGTTCCGCAAAAGAGTTCTGGCGGCTGTGCTGCTCCTGCTCTC
TGCAGTCTCTCTGTTCATTGGAGCCCGGGATCTTAGTCCGCTGGACCTGTTCTCCCTTGACGAGAGCCAGCGGCAGGTGC
TGCTGATCAGCCGTCTGCCCCGCTTGATCAGCCTGATTATCGCGGGTGTTAGCATGAGCATCGTGGGCCTTATGATGCAG
CAGCTCAGCCGCAACAAATTCGTGTCGCCGACCACAGGCGGGACCGATGATTCGGCAAGACTCGGCATTCTTGTCTCCAT
GCTGATGTTCGGTAATGCCGCTCCGATGCAGAAAATGCTGATTGCCTTCGTATTCGCGCTTGCCGGCACCTTCCTGTTCA
TGAAGCTGCTTGACCGGATCAAGCTGAAGGATGCGATTTTCATCCCTTTGGTGGGCCTGATGTTCGGGAATATTATCAGC
TCGGTGACTACCTTTTTTGCCTACAAGCATGATCTGATCCAGAATATTTCCTCCTGGCTGCAGGGGAACTTCTCCCTTGT
CATGACAGGGCGTTATGAGCTGTTATACCTCAGTATTCCGCTTGTTATAGTTGCATACATATATGCTGATAAATTCACGA
TTTCCGGTATGGGCGAGGAATTCGCCGTCGGCCTGGGACTGAATTACAGGCAGGTAGTCAACATCGGGCTGATCATCGTC
TCACTGGTGTCCGTAGTCGTTATTATTACGGTCGGAACGATTCCTTTTCTCGGACTCATTATTCCGAATCTGGTCACACT
GGTCCGCGGCGACCATCTGAAGAAGAGCCTGAGCCACACCGCACTGCTGGGTGCCGTCTTCATCCTGGCCTGCGATATTC
TCGGGCGGGTCGTCATTTATCCCTATGAAATACCGATCGGCCTGACCGTCGGCGTCATCGGCAGCGGTATCTTTCTGTAT
CTGCTTTTGAGGAGAAAGGTCTATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(23-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

95.137

0.511

Multiple sequence alignment