Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PEPE_RS07290 Genome accession   NC_008525
Coordinates   1470729..1472099 (-) Length   456 a.a.
NCBI ID   WP_002833248.1    Uniprot ID   A0AAU7NM61
Organism   Pediococcus pentosaceus ATCC 25745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465729..1477099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEPE_RS07270 (PEPE_1499) - 1466025..1466438 (-) 414 WP_002833252.1 Mini-ribonuclease 3 -
  PEPE_RS07275 (PEPE_1500) cysS 1466431..1467843 (-) 1413 WP_011673700.1 cysteine--tRNA ligase -
  PEPE_RS07280 (PEPE_1501) gltX 1468024..1469511 (-) 1488 WP_002833250.1 glutamate--tRNA ligase -
  PEPE_RS07285 (PEPE_1502) - 1469581..1470711 (-) 1131 WP_011673701.1 PIN/TRAM domain-containing protein -
  PEPE_RS07290 (PEPE_1503) radA 1470729..1472099 (-) 1371 WP_002833248.1 DNA repair protein RadA Machinery gene
  PEPE_RS07295 (PEPE_1504) - 1472199..1472732 (-) 534 WP_002833247.1 dUTP diphosphatase -
  PEPE_RS07300 (PEPE_1505) - 1472869..1473198 (+) 330 WP_002833246.1 GNAT family N-acetyltransferase -
  PEPE_RS07305 (PEPE_1506) rpiA 1473202..1473888 (+) 687 WP_002833245.1 ribose-5-phosphate isomerase RpiA -
  PEPE_RS07310 (PEPE_1507) - 1473958..1475304 (+) 1347 WP_011673702.1 aminopeptidase C -
  PEPE_RS07315 (PEPE_1508) - 1475380..1475760 (-) 381 WP_011673703.1 helix-turn-helix domain-containing protein -
  PEPE_RS07320 (PEPE_1509) - 1475824..1477011 (-) 1188 WP_011673704.1 MFS transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50360.80 Da        Isoelectric Point: 6.7620

>NTDB_id=26512 PEPE_RS07290 WP_002833248.1 1470729..1472099(-) (radA) [Pediococcus pentosaceus ATCC 25745]
MAKVKTQFLCSECGYVSPKFLGRCPNCGRWNTLVEERISEPKNERKSRVSFEGKSSKPQLISEVKMHEEPRVKTGMEELN
RVLGGGVVDGSLVLIGGDPGIGKSTLLLQLSGQLAATDRDVLYVSGEESASQIKMRAERLQVNSERFYLYPETDMSNIRA
VIEELHPQYVIIDSVQTMQEPDIDSAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMREEGLREVANPSEIFLEERLQDANGSAIVVSMEGTRPILVEIQALITPTIFG
NAQRTASGLDRNRVSLIMAVLEKRANLTLQNQDAYLKAAGGVKLDEPAIDLAIAMSIVSSFKNQGTRPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFQRILIPKNNLKGWNPPKGIEVVGVTTITDAIRKAFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=26512 PEPE_RS07290 WP_002833248.1 1470729..1472099(-) (radA) [Pediococcus pentosaceus ATCC 25745]
TTGGCTAAAGTAAAAACACAGTTTTTGTGTTCAGAATGTGGGTATGTTTCACCTAAATTCTTAGGACGTTGTCCTAATTG
TGGAAGATGGAACACTCTGGTTGAAGAGCGGATTAGTGAACCTAAAAATGAACGTAAGAGTCGCGTTAGTTTTGAGGGTA
AAAGTAGTAAACCACAACTAATTTCAGAAGTTAAAATGCACGAAGAACCGCGGGTTAAAACAGGGATGGAAGAACTGAAC
CGAGTGCTCGGTGGTGGAGTAGTGGATGGCTCACTAGTTCTAATTGGTGGAGATCCAGGAATTGGAAAGTCGACCCTGTT
GTTACAACTATCTGGGCAATTAGCTGCTACTGATCGAGATGTTTTATACGTGTCTGGGGAAGAAAGTGCTTCACAGATCA
AGATGCGCGCCGAACGTTTACAGGTTAACAGTGAACGTTTTTACTTGTACCCTGAAACTGATATGTCCAATATTCGTGCG
GTCATTGAGGAACTACATCCTCAGTATGTAATTATTGATTCTGTTCAAACCATGCAAGAGCCCGACATTGATTCAGCAGT
AGGTAGTGTATCGCAAATTCGAGAAATTACAGCCGAATTAATGCAGATTGCTAAAACAAATAACATTACTATTTTTATTG
TTGGTCATGTAACTAAAGGCGGAGCCATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTACTTTATTTTGAA
GGCGATTTGCATCATACGTATCGAATTTTACGAGCGGTTAAAAATCGATTTGGTTCTACGAATGAATTGGGAATTTTCGA
AATGCGAGAGGAAGGGCTTCGAGAAGTAGCCAATCCTTCGGAAATCTTTTTAGAGGAACGCCTGCAAGATGCTAACGGTT
CCGCTATTGTGGTTTCGATGGAAGGTACTCGACCAATTTTGGTCGAAATTCAAGCTTTGATTACGCCTACCATTTTTGGG
AATGCTCAGCGGACTGCTAGCGGGTTGGATCGTAACCGAGTCTCATTGATTATGGCAGTTTTAGAAAAAAGGGCTAATTT
AACGTTGCAGAACCAAGACGCCTACTTAAAGGCTGCTGGCGGAGTGAAATTGGATGAGCCAGCAATTGATTTGGCAATTG
CGATGAGTATTGTATCGAGTTTTAAGAATCAAGGGACGAGACCGACTGATAGCTTTGTTGGCGAAATTGGTTTAACTGGT
GAAATCCGACGGGTTAATCGGATTGAACAACGGGTTGCCGAAGCTCAAAAACTAGGTTTTCAACGAATTTTAATTCCTAA
GAATAATTTGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGG
CGTTTAATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.813

99.781

0.667
  radA Streptococcus mitis NCTC 12261

66.813

99.781

0.667
  radA Streptococcus mitis SK321

66.813

99.781

0.667
  radA Streptococcus pneumoniae TIGR4

66.813

99.781

0.667
  radA Streptococcus pneumoniae D39

66.813

99.781

0.667
  radA Streptococcus pneumoniae R6

66.813

99.781

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651

Multiple sequence alignment