Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXE52_RS13625 Genome accession   NZ_CP031347
Coordinates   2620136..2620612 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O145 strain RM9873-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2615136..2625612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE52_RS13595 (DXE52_14105) - 2615301..2616206 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  DXE52_RS13600 (DXE52_14110) - 2616203..2617272 (+) 1070 Protein_2616 patatin-like phospholipase family protein -
  DXE52_RS13605 (DXE52_14115) - 2617408..2618091 (+) 684 WP_016239564.1 hypothetical protein -
  DXE52_RS13610 (DXE52_14120) - 2618107..2618517 (+) 411 WP_000846713.1 hypothetical protein -
  DXE52_RS13615 (DXE52_14130) - 2618738..2619559 (+) 822 WP_025380451.1 DUF932 domain-containing protein -
  DXE52_RS13620 (DXE52_14135) - 2619641..2620120 (+) 480 WP_000860076.1 antirestriction protein -
  DXE52_RS13625 (DXE52_14140) radC 2620136..2620612 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  DXE52_RS13630 (DXE52_14145) yeeT 2620675..2620896 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DXE52_RS13635 (DXE52_14150) cbeA 2620970..2621338 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DXE52_RS13640 (DXE52_14155) cbtA 2621427..2621800 (+) 374 Protein_2624 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DXE52_RS13645 (DXE52_14160) yeeW 2621797..2621991 (+) 195 WP_000988600.1 DUF5983 family protein -
  DXE52_RS13650 (DXE52_14165) - 2622037..2622117 (+) 81 Protein_2626 hypothetical protein -
  DXE52_RS27405 (DXE52_14170) - 2622406..2622579 (-) 174 WP_032082634.1 transposase domain-containing protein -
  DXE52_RS13660 (DXE52_14175) - 2622606..2622788 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DXE52_RS13665 (DXE52_14180) tmaR 2622889..2623218 (-) 330 WP_000450409.1 DUF496 family protein -
  DXE52_RS13670 (DXE52_14185) yeeA 2623390..2624448 (-) 1059 WP_001200905.1 FUSC family protein -
  DXE52_RS13675 (DXE52_14190) sbmC 2624646..2625119 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=265115 DXE52_RS13625 WP_001186773.1 2620136..2620612(+) (radC) [Escherichia coli O145 strain RM9873-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=265115 DXE52_RS13625 WP_001186773.1 2620136..2620612(+) (radC) [Escherichia coli O145 strain RM9873-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392