Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXE52_RS06560 Genome accession   NZ_CP031347
Coordinates   1301680..1302156 (+) Length   158 a.a.
NCBI ID   WP_001186738.1    Uniprot ID   B7UP40
Organism   Escherichia coli O145 strain RM9873-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296680..1307156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE52_RS06540 (DXE52_06805) - 1297958..1298863 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  DXE52_RS06545 (DXE52_06810) - 1298860..1299930 (+) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  DXE52_RS06550 (DXE52_06820) - 1300270..1301088 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  DXE52_RS06555 (DXE52_06825) - 1301179..1301664 (+) 486 WP_000214398.1 antirestriction protein -
  DXE52_RS06560 (DXE52_06830) radC 1301680..1302156 (+) 477 WP_001186738.1 RadC family protein Machinery gene
  DXE52_RS06565 (DXE52_06835) - 1302219..1302440 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DXE52_RS06570 (DXE52_06840) - 1302603..1302977 (+) 375 WP_001280953.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DXE52_RS06575 (DXE52_06845) - 1303024..1303398 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  DXE52_RS06580 (DXE52_06850) - 1303395..1303886 (+) 492 WP_000976857.1 DUF5983 family protein -
  DXE52_RS06585 (DXE52_06855) - 1303898..1304095 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  DXE52_RS06590 (DXE52_06860) - 1304180..1305022 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  DXE52_RS06600 (DXE52_06870) ghrA 1305492..1306430 (+) 939 WP_000351301.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.28 Da        Isoelectric Point: 6.9242

>NTDB_id=265103 DXE52_RS06560 WP_001186738.1 1301680..1302156(+) (radC) [Escherichia coli O145 strain RM9873-C1]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=265103 DXE52_RS06560 WP_001186738.1 1301680..1302156(+) (radC) [Escherichia coli O145 strain RM9873-C1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UP40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392