Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BS11774_RS20475 Genome accession   NZ_CP026010
Coordinates   3806780..3807526 (-) Length   248 a.a.
NCBI ID   WP_128474145.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3801780..3812526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS20450 (BS11774_20295) mreC 3802186..3803058 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  BS11774_RS20455 (BS11774_20300) mreB 3803089..3804102 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BS11774_RS20460 (BS11774_20305) radC 3804194..3804889 (-) 696 WP_003246034.1 DNA repair protein RadC -
  BS11774_RS20465 (BS11774_20310) maf 3804926..3805495 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  BS11774_RS20470 (BS11774_20315) spoIIB 3805648..3806646 (-) 999 WP_128474144.1 stage II sporulation protein SpoIIB -
  BS11774_RS20475 (BS11774_20320) comC 3806780..3807526 (-) 747 WP_128474145.1 A24 family peptidase Machinery gene
  BS11774_RS20480 (BS11774_20325) folC 3807668..3808960 (-) 1293 WP_128474146.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BS11774_RS20485 (BS11774_20330) valS 3809020..3811662 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  BS11774_RS20490 (BS11774_20335) - 3812110..3812301 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26439.03 Da        Isoelectric Point: 9.7944

>NTDB_id=265018 BS11774_RS20475 WP_128474145.1 3806780..3807526(-) (comC) [Bacillus subtilis strain ATCC 11774]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTLAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=265018 BS11774_RS20475 WP_128474145.1 3806780..3807526(-) (comC) [Bacillus subtilis strain ATCC 11774]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCTTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment