Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BS11774_RS18915 Genome accession   NZ_CP026010
Coordinates   3542683..3543450 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain ATCC 11774     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3537683..3548450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS18895 (BS11774_18785) ppsR 3537857..3538669 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  BS11774_RS18900 (BS11774_18790) ccpN 3538695..3539333 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  BS11774_RS18905 (BS11774_18795) glyS 3539466..3541505 (-) 2040 WP_128474065.1 glycine--tRNA ligase subunit beta -
  BS11774_RS18910 (BS11774_18800) glyQ 3541498..3542385 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  BS11774_RS18915 (BS11774_18805) recO 3542683..3543450 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  BS11774_RS18920 (BS11774_18810) yqzL 3543487..3543630 (-) 144 WP_003230053.1 YqzL family protein -
  BS11774_RS18925 (BS11774_18815) era 3543778..3544683 (-) 906 WP_003230051.1 GTPase Era -
  BS11774_RS18930 (BS11774_18820) - 3544664..3545074 (-) 411 WP_003230049.1 cytidine deaminase -
  BS11774_RS18935 (BS11774_18825) unpK 3545193..3545564 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  BS11774_RS18940 (BS11774_18830) ybeY 3545545..3546018 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  BS11774_RS18945 (BS11774_18835) pgpH 3546019..3548154 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=265011 BS11774_RS18915 WP_003230055.1 3542683..3543450(-) (recO) [Bacillus subtilis strain ATCC 11774]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=265011 BS11774_RS18915 WP_003230055.1 3542683..3543450(-) (recO) [Bacillus subtilis strain ATCC 11774]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATTCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment