Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BS11774_RS17365 Genome accession   NZ_CP026010
Coordinates   3271515..3272135 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3266515..3277135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS17325 (BS11774_17215) ptsA 3267643..3268149 (-) 507 WP_128474272.1 PTS glucose transporter subunit IIA -
  BS11774_RS17330 (BS11774_17220) ypqA 3268287..3268706 (+) 420 WP_128474018.1 Hsp20/alpha crystallin family protein -
  BS11774_RS17335 (BS11774_17225) sppG 3268727..3269104 (-) 378 WP_015251832.1 YppG family protein -
  BS11774_RS17340 (BS11774_17230) yppF 3269292..3269480 (+) 189 WP_003230690.1 YppF family protein -
  BS11774_RS17345 (BS11774_17235) yppE 3269522..3269893 (-) 372 WP_029726786.1 YppE family protein -
  BS11774_RS17350 (BS11774_17240) yppD 3269939..3270184 (-) 246 WP_015251831.1 YppD family protein -
  BS11774_RS17355 (BS11774_17245) sspM 3270383..3270487 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BS11774_RS17360 (BS11774_17250) yppC 3270512..3271474 (-) 963 WP_128474019.1 DUF2515 domain-containing protein -
  BS11774_RS17365 (BS11774_17255) recU 3271515..3272135 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BS11774_RS17370 (BS11774_17260) ponA 3272157..3274904 (+) 2748 WP_128474020.1 PBP1A family penicillin-binding protein -
  BS11774_RS17375 (BS11774_17265) ypoC 3274980..3275474 (-) 495 WP_128474021.1 YpoC family protein -
  BS11774_RS17380 (BS11774_17270) nth 3275471..3276130 (-) 660 WP_009967580.1 endonuclease III -
  BS11774_RS17385 (BS11774_17275) dnaD 3276149..3276847 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=264999 BS11774_RS17365 WP_004399067.1 3271515..3272135(+) (recU) [Bacillus subtilis strain ATCC 11774]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=264999 BS11774_RS17365 WP_004399067.1 3271515..3272135(+) (recU) [Bacillus subtilis strain ATCC 11774]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACATAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment