Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BS11774_RS13895 Genome accession   NZ_CP026010
Coordinates   2625592..2625870 (+) Length   92 a.a.
NCBI ID   WP_128473878.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620592..2630870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS13875 (BS11774_13805) panEB 2621781..2622692 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  BS11774_RS13880 (BS11774_13810) ampS 2622726..2623958 (-) 1233 WP_003232341.1 aminopeptidase -
  BS11774_RS13885 (BS11774_13815) ykpC 2624067..2624201 (-) 135 WP_003238865.1 protein YkpC -
  BS11774_RS13890 (BS11774_13820) mreBH 2624302..2625309 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  BS11774_RS13895 (BS11774_13825) abrB 2625592..2625870 (+) 279 WP_128473878.1 transcriptional regulator AbhA Regulator
  BS11774_RS13900 (BS11774_13830) kinC 2626060..2627346 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  BS11774_RS13905 (BS11774_13835) ykqA 2627362..2628189 (+) 828 WP_128473879.1 gamma-glutamylcyclotransferase -
  BS11774_RS13910 (BS11774_13840) ktrC 2628252..2628917 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BS11774_RS13915 (BS11774_13845) ade 2629073..2630806 (+) 1734 WP_128473880.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10304.11 Da        Isoelectric Point: 5.8808

>NTDB_id=264994 BS11774_RS13895 WP_128473878.1 2625592..2625870(+) (abrB) [Bacillus subtilis strain ATCC 11774]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFFDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=264994 BS11774_RS13895 WP_128473878.1 2625592..2625870(+) (abrB) [Bacillus subtilis strain ATCC 11774]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTTTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565

Multiple sequence alignment