Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LBYS11_RS20935 Genome accession   NZ_CP026007
Coordinates   4179194..4180144 (-) Length   316 a.a.
NCBI ID   WP_048394199.1    Uniprot ID   A0A2X0XHC4
Organism   Lysinibacillus sp. YS11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4174194..4185144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBYS11_RS20905 (LBYS11_20905) - 4174891..4175436 (+) 546 WP_103118905.1 hypothetical protein -
  LBYS11_RS20915 (LBYS11_20915) - 4176086..4176400 (-) 315 WP_054549614.1 antibiotic biosynthesis monooxygenase -
  LBYS11_RS20920 (LBYS11_20920) - 4176402..4177427 (-) 1026 WP_103118907.1 siderophore ABC transporter substrate-binding protein -
  LBYS11_RS20925 (LBYS11_20925) - 4177490..4178251 (-) 762 WP_048394201.1 ABC transporter ATP-binding protein -
  LBYS11_RS20930 (LBYS11_20930) - 4178248..4179201 (-) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  LBYS11_RS20935 (LBYS11_20935) ceuB 4179194..4180144 (-) 951 WP_048394199.1 ABC transporter permease Machinery gene
  LBYS11_RS20940 (LBYS11_20940) - 4180428..4181479 (-) 1052 Protein_4103 hypothetical protein -
  LBYS11_RS20945 (LBYS11_20945) menC 4181531..4182637 (-) 1107 WP_103118908.1 o-succinylbenzoate synthase -
  LBYS11_RS20950 (LBYS11_20950) - 4182659..4183483 (-) 825 WP_048394192.1 GNAT family N-acetyltransferase -
  LBYS11_RS20955 (LBYS11_20955) - 4183483..4184628 (-) 1146 WP_048394190.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34810.02 Da        Isoelectric Point: 10.1980

>NTDB_id=264914 LBYS11_RS20935 WP_048394199.1 4179194..4180144(-) (ceuB) [Lysinibacillus sp. YS11]
MKIRYLLTATVLLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=264914 LBYS11_RS20935 WP_048394199.1 4179194..4180144(-) (ceuB) [Lysinibacillus sp. YS11]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTTTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCGGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCATATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTAAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCATTTCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTGTTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0XHC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528

Multiple sequence alignment