Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LBYS11_RS14170 Genome accession   NZ_CP026007
Coordinates   2857453..2859144 (-) Length   563 a.a.
NCBI ID   WP_054549167.1    Uniprot ID   -
Organism   Lysinibacillus sp. YS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2852453..2864144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBYS11_RS14150 (LBYS11_14150) - 2852875..2854446 (-) 1572 WP_048392301.1 DUF342 domain-containing protein -
  LBYS11_RS23715 (LBYS11_14155) - 2854725..2854904 (-) 180 WP_103118411.1 hypothetical protein -
  LBYS11_RS14160 (LBYS11_14160) spo0A 2855208..2855998 (-) 791 Protein_2813 sporulation transcription factor Spo0A -
  LBYS11_RS14165 (LBYS11_14165) - 2856383..2857330 (-) 948 WP_048392300.1 SpoIVB peptidase S55 domain-containing protein -
  LBYS11_RS14170 (LBYS11_14170) recN 2857453..2859144 (-) 1692 WP_054549167.1 DNA repair protein RecN Machinery gene
  LBYS11_RS14175 (LBYS11_14175) ahrC 2859178..2859627 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  LBYS11_RS14180 (LBYS11_14180) - 2859728..2860546 (-) 819 WP_054549166.1 TlyA family RNA methyltransferase -
  LBYS11_RS14185 (LBYS11_14185) dxs 2860546..2862446 (-) 1901 Protein_2818 1-deoxy-D-xylulose-5-phosphate synthase -
  LBYS11_RS14190 (LBYS11_14190) - 2862610..2863491 (-) 882 WP_103118412.1 polyprenyl synthetase family protein -
  LBYS11_RS14195 (LBYS11_14195) xseB 2863495..2863728 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63451.26 Da        Isoelectric Point: 4.6214

>NTDB_id=264905 LBYS11_RS14170 WP_054549167.1 2857453..2859144(-) (recN) [Lysinibacillus sp. YS11]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGTT
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=264905 LBYS11_RS14170 WP_054549167.1 2857453..2859144(-) (recN) [Lysinibacillus sp. YS11]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCTATTATCATTGATGCGGTGCATTTACTTGCAGGAGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACCGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTCGTGCCTTTGTCGGTACTAAGAGACATTGGGGCAAGTCTCATAGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAGTTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGCGCCCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGC
GAAACGAAAGGGCTTGATTGGATCGGAACAGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTGG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGAACGACA
GTGGAAGAAATTTTAGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTTGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATCTTTGATGAGGTGGATACAGGTGTCAGTGGTCGTGTTGCGCAGGCGATTGCAGAGAAAATTGCCGCG
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATTAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACGGAAATTACAGCGTTGACACTACAGCATGCGACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536

Multiple sequence alignment