Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DXE55_RS17560 Genome accession   NZ_CP031341
Coordinates   3427256..3427771 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O145 strain RM12275-C1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422256..3432771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE55_RS17540 (DXE55_18105) emrA 3422406..3423578 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DXE55_RS17545 (DXE55_18110) emrB 3423595..3425133 (+) 1539 WP_001400788.1 multidrug efflux MFS transporter permease subunit EmrB -
  DXE55_RS17550 (DXE55_18115) - 3425391..3426098 (+) 708 WP_001097117.1 RNA ligase family protein -
  DXE55_RS17555 (DXE55_18120) - 3426095..3427207 (+) 1113 Protein_3403 AAA family ATPase -
  DXE55_RS17560 (DXE55_18125) luxS 3427256..3427771 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DXE55_RS17565 (DXE55_18130) gshA 3427921..3429477 (-) 1557 WP_000611829.1 glutamate--cysteine ligase -
  DXE55_RS17570 (DXE55_18135) yqaA 3429550..3429978 (-) 429 WP_001287453.1 YqaA family protein -
  DXE55_RS17575 (DXE55_18140) yqaB 3429975..3430541 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DXE55_RS17605 (DXE55_18170) csrA 3431999..3432184 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=264896 DXE55_RS17560 WP_001130211.1 3427256..3427771(-) (luxS) [Escherichia coli O145 strain RM12275-C1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=264896 DXE55_RS17560 WP_001130211.1 3427256..3427771(-) (luxS) [Escherichia coli O145 strain RM12275-C1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment