Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPYM_RS04565 Genome accession   NC_009332
Coordinates   893157..894227 (+) Length   356 a.a.
NCBI ID   WP_011888858.1    Uniprot ID   A2RED8
Organism   Streptococcus pyogenes str. Manfredo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888157..899227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS04545 (SpyM50881) - 889163..889861 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  SPYM_RS04550 (SpyM50882) - 889959..890291 (+) 333 WP_002989745.1 putative DNA-binding protein -
  SPYM_RS04555 (SpyM50883) ffh 890306..891868 (+) 1563 WP_011888857.1 signal recognition particle protein -
  SPYM_RS04560 (SpyM50884) - 891985..892683 (-) 699 WP_002993300.1 XRE family transcriptional regulator -
  SPYM_RS04565 (SpyM50885) xerS 893157..894227 (+) 1071 WP_011888858.1 tyrosine recombinase XerS Machinery gene
  SPYM_RS04570 (SpyM50886) - 894635..895117 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  SPYM_RS04575 (SpyM50887) citC 895206..896258 (+) 1053 WP_011184530.1 [citrate (pro-3S)-lyase] ligase -
  SPYM_RS04580 (SpyM50888) - 896368..897762 (-) 1395 WP_023077328.1 oxaloacetate decarboxylase subunit alpha -
  SPYM_RS04585 (SpyM50889) citX 897777..898355 (-) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41473.50 Da        Isoelectric Point: 9.4794

>NTDB_id=26487 SPYM_RS04565 WP_011888858.1 893157..894227(+) (xerS) [Streptococcus pyogenes str. Manfredo]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKNDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=26487 SPYM_RS04565 WP_011888858.1 893157..894227(+) (xerS) [Streptococcus pyogenes str. Manfredo]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAATGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RED8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801

Multiple sequence alignment