Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV160_RS10095 Genome accession   NZ_CP031336
Coordinates   1691517..1692116 (-) Length   199 a.a.
NCBI ID   WP_002220676.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686517..1697116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS14220 - 1686792..1686917 (-) 126 Protein_1630 IS5/IS1182 family transposase -
  DV160_RS10055 dapC 1687005..1688192 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  DV160_RS10060 dut 1688268..1688720 (-) 453 WP_002220679.1 dUTP diphosphatase -
  DV160_RS10065 - 1688863..1689291 (+) 429 Protein_1633 AzlC family ABC transporter permease -
  DV160_RS10090 pilX 1691039..1691512 (-) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  DV160_RS10095 pilK 1691517..1692116 (-) 600 WP_002220676.1 pilus assembly PilX family protein Machinery gene
  DV160_RS10100 pilJ 1692095..1693033 (-) 939 WP_002220674.1 PilW family protein Machinery gene
  DV160_RS10105 pilV 1693030..1693641 (-) 612 WP_002247807.1 type IV pilus modification protein PilV Regulator
  DV160_RS10110 pilH 1693665..1694330 (-) 666 WP_115425123.1 GspH/FimT family pseudopilin Machinery gene
  DV160_RS10115 dnaB 1694639..1696045 (-) 1407 WP_002220671.1 replicative DNA helicase -
  DV160_RS10125 - 1696208..1696795 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21932.93 Da        Isoelectric Point: 7.5812

>NTDB_id=264841 DV160_RS10095 WP_002220676.1 1691517..1692116(-) (pilK) [Neisseria meningitidis strain M21717]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNMRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPAKSTGLCIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=264841 DV160_RS10095 WP_002220676.1 1691517..1692116(-) (pilK) [Neisseria meningitidis strain M21717]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATATGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAAT
CTACAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.905