Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C1T23_RS03940 Genome accession   NZ_CP025988
Coordinates   797523..799334 (-) Length   603 a.a.
NCBI ID   WP_021356499.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain LM1004 isolate kimchi     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 792523..804334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1T23_RS03915 (C1T23_00780) - 793127..793765 (+) 639 WP_003645947.1 copper homeostasis protein CutC -
  C1T23_RS03920 (C1T23_00781) - 794019..794921 (-) 903 WP_003640877.1 RluA family pseudouridine synthase -
  C1T23_RS03925 (C1T23_00782) - 794918..795721 (-) 804 WP_003640878.1 NAD kinase -
  C1T23_RS03930 (C1T23_00783) - 795718..796380 (-) 663 WP_003640879.1 GTP pyrophosphokinase family protein -
  C1T23_RS03935 (C1T23_00784) - 796673..797308 (+) 636 WP_003640880.1 DsbA family protein -
  C1T23_RS03940 (C1T23_00785) pepF 797523..799334 (-) 1812 WP_021356499.1 oligoendopeptidase F Regulator
  C1T23_RS03945 (C1T23_00786) - 799412..800497 (-) 1086 WP_021356500.1 competence protein CoiA -
  C1T23_RS03950 (C1T23_00787) - 800682..801413 (-) 732 WP_003640883.1 adaptor protein MecA -
  C1T23_RS03955 (C1T23_00788) spxA 801549..801947 (-) 399 WP_011101690.1 transcriptional regulator SpxA -
  C1T23_RS03960 (C1T23_00789) - 802234..802977 (-) 744 WP_003644623.1 MBL fold metallo-hydrolase -
  C1T23_RS03965 (C1T23_00790) - 803118..803618 (+) 501 WP_003640886.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67593.58 Da        Isoelectric Point: 4.8823

>NTDB_id=264820 C1T23_RS03940 WP_021356499.1 797523..799334(-) (pepF) [Lactiplantibacillus plantarum strain LM1004 isolate kimchi]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELTPGELDAYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATASQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLAGRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=264820 C1T23_RS03940 WP_021356499.1 797523..799334(-) (pepF) [Lactiplantibacillus plantarum strain LM1004 isolate kimchi]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAGACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAACGCCGGGCGAATTGGATGCGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGCTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGTTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTCACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCTTATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCTTCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGACGCCGTCGTCAGTGATCC
GCAAATTGCCGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCCGGCCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment