Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV160_RS03350 Genome accession   NZ_CP031336
Coordinates   549960..550466 (-) Length   168 a.a.
NCBI ID   WP_002218101.1    Uniprot ID   A1KW60
Organism   Neisseria meningitidis strain M21717     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 544960..555466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS03345 polA 547022..549814 (-) 2793 WP_002224673.1 DNA polymerase I -
  DV160_RS03350 luxS 549960..550466 (-) 507 WP_002218101.1 S-ribosylhomocysteine lyase Regulator
  DV160_RS03355 - 550488..550907 (-) 420 WP_002218100.1 DUF2251 domain-containing protein -
  DV160_RS03360 cyaY 550938..551261 (-) 324 WP_002218099.1 iron donor protein CyaY -
  DV160_RS03365 lptM 551332..551502 (+) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  DV160_RS03370 lysA 551513..552757 (+) 1245 WP_002221655.1 diaminopimelate decarboxylase -
  DV160_RS03375 - 552793..552885 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DV160_RS03380 - 552882..554417 (-) 1536 WP_002221654.1 sodium-dependent transporter -
  DV160_RS03385 - 554630..555283 (-) 654 WP_002221653.1 IS1595-like element IS1016C family transposase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18683.41 Da        Isoelectric Point: 5.5451

>NTDB_id=264807 DV160_RS03350 WP_002218101.1 549960..550466(-) (luxS) [Neisseria meningitidis strain M21717]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCIPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=264807 DV160_RS03350 WP_002218101.1 549960..550466(-) (luxS) [Neisseria meningitidis strain M21717]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCATTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCATGGCTCGCCTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762