Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C1A50_RS21025 Genome accession   NZ_CP025957
Coordinates   4838940..4839893 (-) Length   317 a.a.
NCBI ID   WP_039276241.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain HY96-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4833940..4844893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A50_RS21000 (C1A50_4479) - 4834409..4835320 (-) 912 WP_031462257.1 aldo/keto reductase -
  C1A50_RS21005 (C1A50_4480) - 4835478..4836221 (-) 744 WP_019688640.1 alpha/beta hydrolase -
  C1A50_RS21010 (C1A50_4481) - 4836255..4837235 (-) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  C1A50_RS21015 (C1A50_4482) - 4837248..4838006 (-) 759 WP_031462259.1 ABC transporter ATP-binding protein -
  C1A50_RS21020 (C1A50_4483) - 4838000..4838950 (-) 951 WP_031462260.1 iron chelate uptake ABC transporter family permease subunit -
  C1A50_RS21025 (C1A50_4484) ceuB 4838940..4839893 (-) 954 WP_039276241.1 ABC transporter permease Machinery gene
  C1A50_RS21030 (C1A50_4485) - 4840218..4840895 (+) 678 WP_031462262.1 response regulator transcription factor -
  C1A50_RS21035 (C1A50_4486) - 4840896..4841813 (+) 918 WP_031462263.1 sensor histidine kinase KdpD -
  C1A50_RS21040 (C1A50_4487) - 4841921..4842598 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34718.70 Da        Isoelectric Point: 9.9012

>NTDB_id=264734 C1A50_RS21025 WP_039276241.1 4838940..4839893(-) (ceuB) [Paenibacillus polymyxa strain HY96-2]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAIFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=264734 C1A50_RS21025 WP_039276241.1 4838940..4839893(-) (ceuB) [Paenibacillus polymyxa strain HY96-2]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTATTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTCATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCATTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGAAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498

Multiple sequence alignment