Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C1A50_RS11825 Genome accession   NZ_CP025957
Coordinates   2714078..2715928 (+) Length   616 a.a.
NCBI ID   WP_017426912.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain HY96-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2709078..2720928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A50_RS11805 (C1A50_2518) - 2709620..2711293 (+) 1674 WP_103042424.1 RICIN domain-containing protein -
  C1A50_RS25985 (C1A50_2519) - 2711461..2711676 (+) 216 Protein_2265 nitronate monooxygenase -
  C1A50_RS11815 (C1A50_2520) - 2711835..2712242 (+) 408 WP_045245283.1 MarR family winged helix-turn-helix transcriptional regulator -
  C1A50_RS11820 (C1A50_2521) rcrP 2712322..2714091 (+) 1770 WP_103042426.1 ABC transporter ATP-binding protein Regulator
  C1A50_RS11825 (C1A50_2522) rcrQ 2714078..2715928 (+) 1851 WP_017426912.1 ABC transporter ATP-binding protein Regulator
  C1A50_RS11830 (C1A50_2523) - 2716136..2716903 (+) 768 WP_045245285.1 IclR family transcriptional regulator -
  C1A50_RS11835 (C1A50_2525) - 2717090..2717779 (+) 690 WP_045245286.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68244.16 Da        Isoelectric Point: 6.8584

>NTDB_id=264724 C1A50_RS11825 WP_017426912.1 2714078..2715928(+) (rcrQ) [Paenibacillus polymyxa strain HY96-2]
MDKNEHTVGSKHIEMKQRGPIGRGHTEGMGTGKKANDFKKNIRQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=264724 C1A50_RS11825 WP_017426912.1 2714078..2715928(+) (rcrQ) [Paenibacillus polymyxa strain HY96-2]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCATACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCGCCAGCTCTTATCCTACATCAAGGCCTATATGC
CTATGATCATACTCTCAATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGGCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAATGAAGACCATATGATTATCAAAGATTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TCATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTTATGAAGGACGGTAA
CATTATTGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524

Multiple sequence alignment