Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LVIS_RS18735 Genome accession   NC_008497
Coordinates   1445845..1447650 (-) Length   601 a.a.
NCBI ID   WP_011668201.1    Uniprot ID   -
Organism   Levilactobacillus brevis ATCC 367     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440845..1452650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVIS_RS18710 (LVIS_1471) - 1441448..1442347 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  LVIS_RS18715 (LVIS_1472) - 1442344..1443147 (-) 804 WP_011668197.1 NAD kinase -
  LVIS_RS18720 (LVIS_1473) - 1443149..1443808 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  LVIS_RS18725 (LVIS_1474) - 1444122..1444760 (+) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  LVIS_RS18730 (LVIS_1475) - 1444923..1445786 (+) 864 WP_011668200.1 DegV family protein -
  LVIS_RS18735 (LVIS_1476) pepF 1445845..1447650 (-) 1806 WP_011668201.1 oligoendopeptidase F Regulator
  LVIS_RS18740 (LVIS_1477) - 1447717..1448811 (-) 1095 WP_011668202.1 competence protein CoiA -
  LVIS_RS18745 (LVIS_1478) trmB 1448938..1449585 (-) 648 WP_011668203.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  LVIS_RS18750 (LVIS_1479) - 1449651..1450442 (-) 792 WP_011668204.1 phosphotransferase family protein -
  LVIS_RS18755 (LVIS_1480) - 1450504..1451730 (-) 1227 WP_011668205.1 ABC transporter permease -
  LVIS_RS18760 (LVIS_1481) - 1451727..1452461 (-) 735 WP_011668206.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67149.17 Da        Isoelectric Point: 4.8300

>NTDB_id=26467 LVIS_RS18735 WP_011668201.1 1445845..1447650(-) (pepF) [Levilactobacillus brevis ATCC 367]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKAAIAAIKTQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILDLPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=26467 LVIS_RS18735 WP_011668201.1 1445845..1447650(-) (pepF) [Levilactobacillus brevis ATCC 367]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGCAGC
TTTTAAGGCCGCAATTGCTGCAATTAAAACGCAAACAACGGTCGTGGCCGGTTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATATGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCAGCCCAGGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGTTGATTGATAACGACCCCCGGCTAG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGGAAGAAAAATTGCTAGCG
GGTGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTACAGCGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAAGCCGGCAATGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCTTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTAGCGAGCGAAGTCAAA
ACGCATAATTTTAGTGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCAGCGATGAGTCGCAACAATGTGCCAGCGGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGATCATTTAGACTCACTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGACTTGCCACAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTCTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.831

98.17

0.489

Multiple sequence alignment