Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV143_RS10030 Genome accession   NZ_CP031333
Coordinates   1691448..1691954 (-) Length   168 a.a.
NCBI ID   WP_002245236.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686448..1696954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS10015 - 1686489..1687160 (-) 672 WP_002229991.1 Fic family protein -
  DV143_RS10025 polA 1688507..1691302 (-) 2796 WP_002235242.1 DNA polymerase I -
  DV143_RS10030 luxS 1691448..1691954 (-) 507 WP_002245236.1 S-ribosylhomocysteine lyase Regulator
  DV143_RS10035 - 1691976..1692395 (-) 420 WP_002243080.1 DUF2251 domain-containing protein -
  DV143_RS10040 - 1692421..1693437 (-) 1017 WP_002256967.1 YeiH family protein -
  DV143_RS10045 - 1693464..1693595 (-) 132 Protein_1640 iron donor protein CyaY -
  DV143_RS10050 - 1693580..1693720 (-) 141 Protein_1641 putative sulfate exporter family transporter -
  DV143_RS10055 cyaY 1693747..1694070 (-) 324 WP_002218099.1 iron donor protein CyaY -
  DV143_RS10060 - 1694141..1694311 (+) 171 WP_002226757.1 lipoprotein -
  DV143_RS10065 lysA 1694322..1695542 (+) 1221 WP_002245234.1 diaminopimelate decarboxylase -
  DV143_RS10070 - 1695602..1695694 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18639.36 Da        Isoelectric Point: 5.5451

>NTDB_id=264629 DV143_RS10030 WP_002245236.1 1691448..1691954(-) (luxS) [Neisseria meningitidis strain M18727]
MPLLDSFKVDHTRMHAPAVRVAKTMATPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVGNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=264629 DV143_RS10030 WP_002245236.1 1691448..1691954(-) (luxS) [Neisseria meningitidis strain M18727]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGGCCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTGGGCAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762