Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C0W57_RS05540 Genome accession   NZ_CP025939
Coordinates   1037199..1037807 (-) Length   202 a.a.
NCBI ID   WP_029973656.1    Uniprot ID   A0AAP3YAZ1
Organism   Bacillus velezensis strain 10075     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1032199..1042807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W57_RS05520 (C0W57_05520) dnaD 1032435..1033133 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  C0W57_RS05525 (C0W57_05525) nth 1033152..1033811 (+) 660 WP_007612187.1 endonuclease III -
  C0W57_RS05530 (C0W57_05530) - 1033808..1034299 (+) 492 WP_022553044.1 YpoC family protein -
  C0W57_RS05535 (C0W57_05535) - 1034377..1037160 (-) 2784 WP_029973655.1 PBP1A family penicillin-binding protein -
  C0W57_RS05540 (C0W57_05540) recU 1037199..1037807 (-) 609 WP_029973656.1 Holliday junction resolvase RecU Machinery gene
  C0W57_RS05545 (C0W57_05545) - 1037849..1038811 (+) 963 WP_029973657.1 DUF2515 domain-containing protein -
  C0W57_RS05550 (C0W57_05550) sspM 1038855..1038959 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  C0W57_RS05555 (C0W57_05555) - 1039165..1039410 (+) 246 WP_014418233.1 DUF5446 family protein -
  C0W57_RS05560 (C0W57_05560) - 1039456..1039824 (+) 369 WP_029973658.1 YppE family protein -
  C0W57_RS05565 (C0W57_05565) - 1039863..1040045 (-) 183 WP_003153532.1 YppF family protein -
  C0W57_RS05570 (C0W57_05570) - 1040232..1040699 (+) 468 WP_029973659.1 YppG family protein -
  C0W57_RS05575 (C0W57_05575) - 1040729..1041142 (-) 414 WP_029973660.1 Hsp20/alpha crystallin family protein -
  C0W57_RS05580 (C0W57_05580) - 1041281..1041788 (+) 508 Protein_1082 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=264615 C0W57_RS05540 WP_029973656.1 1037199..1037807(-) (recU) [Bacillus velezensis strain 10075]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=264615 C0W57_RS05540 WP_029973656.1 1037199..1037807(-) (recU) [Bacillus velezensis strain 10075]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment