Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C1H56_RS12020 Genome accession   NZ_CP025936
Coordinates   2558682..2559314 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain A1552     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553682..2564314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H56_RS11995 (C1H56_11995) - 2553748..2555664 (+) 1917 WP_000627678.1 ABC transporter ATP-binding protein -
  C1H56_RS12000 (C1H56_12000) - 2555665..2556150 (+) 486 WP_001278735.1 TIGR02444 family protein -
  C1H56_RS12005 (C1H56_12005) - 2556147..2557136 (+) 990 WP_000627574.1 hydrolase -
  C1H56_RS12010 (C1H56_12010) - 2557264..2557473 (+) 210 WP_000586562.1 YheU family protein -
  C1H56_RS12015 (C1H56_12015) - 2557570..2558439 (+) 870 WP_001274669.1 phosphoribulokinase -
  C1H56_RS12020 (C1H56_12020) crp 2558682..2559314 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  C1H56_RS12025 (C1H56_12025) - 2559393..2560184 (-) 792 WP_000189091.1 DUF1338 domain-containing protein -
  C1H56_RS12030 (C1H56_12030) astD 2560327..2561784 (-) 1458 WP_000150128.1 succinylglutamate-semialdehyde dehydrogenase -
  C1H56_RS12035 (C1H56_12035) astA 2561794..2562813 (-) 1020 WP_000962042.1 arginine N-succinyltransferase -
  C1H56_RS12040 (C1H56_12040) - 2562953..2564164 (-) 1212 WP_000215482.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=264564 C1H56_RS12020 WP_000242749.1 2558682..2559314(+) (crp) [Vibrio cholerae strain A1552]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=264564 C1H56_RS12020 WP_000242749.1 2558682..2559314(+) (crp) [Vibrio cholerae strain A1552]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAGCTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment