Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | C1H56_RS01525 | Genome accession | NZ_CP025936 |
| Coordinates | 292924..293931 (+) | Length | 335 a.a. |
| NCBI ID | WP_000116737.1 | Uniprot ID | O51804 |
| Organism | Vibrio cholerae strain A1552 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 249179..308978 | 292924..293931 | within | 0 |
Gene organization within MGE regions
Location: 249179..308978
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1H56_RS01290 (C1H56_01290) | - | 249179..250939 (-) | 1761 | Protein_210 | lysophospholipid acyltransferase family protein | - |
| C1H56_RS01300 (C1H56_01300) | - | 251699..253660 (-) | 1962 | WP_000466016.1 | DUF3732 domain-containing protein | - |
| C1H56_RS01305 (C1H56_01305) | - | 253661..254173 (-) | 513 | WP_000917213.1 | three component ABC system middle component | - |
| C1H56_RS01310 (C1H56_01310) | - | 254166..255332 (-) | 1167 | WP_000654528.1 | ABC-three component system protein | - |
| C1H56_RS01315 (C1H56_01315) | - | 255588..256463 (-) | 876 | WP_001139148.1 | MarR family transcriptional regulator | - |
| C1H56_RS01320 (C1H56_01320) | - | 256848..257492 (+) | 645 | WP_000042053.1 | inovirus Gp2 family protein | - |
| C1H56_RS01325 (C1H56_01325) | - | 257554..258228 (+) | 675 | WP_000149629.1 | inovirus Gp2 family protein | - |
| C1H56_RS01330 (C1H56_01330) | - | 258282..258881 (+) | 600 | WP_001883316.1 | inovirus Gp2 family protein | - |
| C1H56_RS01335 (C1H56_01335) | - | 258945..259145 (+) | 201 | WP_001211742.1 | AlpA family transcriptional regulator | - |
| C1H56_RS01340 (C1H56_01340) | - | 259227..259667 (+) | 441 | WP_000122383.1 | ribonuclease HI | - |
| C1H56_RS01345 (C1H56_01345) | - | 259748..260939 (-) | 1192 | Protein_220 | IS3 family transposase | - |
| C1H56_RS01350 (C1H56_01350) | - | 261442..262352 (-) | 911 | Protein_221 | IS5-like element ISVch8 family transposase | - |
| C1H56_RS01355 (C1H56_01355) | - | 262741..263265 (-) | 525 | WP_000042161.1 | type II secretion system protein | - |
| C1H56_RS01360 (C1H56_01360) | - | 263539..263763 (-) | 225 | WP_306461095.1 | high-affinity zinc uptake system protein ZnuA precursor | - |
| C1H56_RS01365 (C1H56_01365) | - | 263961..265241 (+) | 1281 | WP_001883323.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| C1H56_RS01370 (C1H56_01370) | - | 265419..265646 (-) | 228 | WP_000749780.1 | hypothetical protein | - |
| C1H56_RS01375 (C1H56_01375) | - | 265694..266062 (-) | 369 | WP_000176666.1 | hypothetical protein | - |
| C1H56_RS01380 (C1H56_01380) | - | 266093..266827 (-) | 735 | WP_000066832.1 | WYL domain-containing protein | - |
| C1H56_RS01390 (C1H56_01390) | - | 267146..267589 (-) | 444 | WP_000041085.1 | DUF2787 domain-containing protein | - |
| C1H56_RS01395 (C1H56_01395) | - | 267639..268076 (-) | 438 | WP_000572499.1 | DUF2787 domain-containing protein | - |
| C1H56_RS01400 (C1H56_01400) | radC | 268073..268546 (-) | 474 | WP_001068472.1 | DNA repair protein RadC | - |
| C1H56_RS01405 (C1H56_01405) | - | 268858..270669 (+) | 1812 | WP_000110139.1 | DUF262 domain-containing protein | - |
| C1H56_RS01410 (C1H56_01410) | - | 270669..273134 (+) | 2466 | WP_000434811.1 | DUF262 domain-containing protein | - |
| C1H56_RS01415 (C1H56_01415) | - | 273501..275456 (+) | 1956 | WP_001143868.1 | hypothetical protein | - |
| C1H56_RS01420 (C1H56_01420) | - | 275763..276940 (+) | 1178 | WP_100068541.1 | IS3 family transposase | - |
| C1H56_RS01425 (C1H56_01425) | - | 276976..278217 (-) | 1242 | WP_001129565.1 | integrase domain-containing protein | - |
| C1H56_RS01435 (C1H56_01435) | rpoD | 278603..280480 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| C1H56_RS01440 (C1H56_01440) | dnaG | 280579..282342 (-) | 1764 | WP_000907210.1 | DNA primase | - |
| C1H56_RS01445 (C1H56_01445) | - | 282432..282875 (-) | 444 | WP_001173892.1 | GatB/YqeY domain-containing protein | - |
| C1H56_RS01450 (C1H56_01450) | rpsU | 282905..283120 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| C1H56_RS01455 (C1H56_01455) | tsaD | 283361..284380 (+) | 1020 | WP_001220122.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| C1H56_RS01460 (C1H56_01460) | - | 284534..285346 (+) | 813 | WP_001087495.1 | alpha/beta fold hydrolase | - |
| C1H56_RS01465 (C1H56_01465) | plsY | 285395..286021 (-) | 627 | WP_000188027.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| C1H56_RS01475 (C1H56_01475) | folB | 286210..286563 (+) | 354 | WP_000361954.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| C1H56_RS01480 (C1H56_01480) | folK | 286560..287066 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| C1H56_RS01485 (C1H56_01485) | - | 287063..287866 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| C1H56_RS01490 (C1H56_01490) | ftsB | 287981..288265 (+) | 285 | WP_001263189.1 | cell division protein FtsB | - |
| C1H56_RS01495 (C1H56_01495) | ispD | 288262..288960 (+) | 699 | WP_001061951.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| C1H56_RS01500 (C1H56_01500) | ispF | 288957..289433 (+) | 477 | WP_000619209.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| C1H56_RS01505 (C1H56_01505) | truD | 289463..290548 (+) | 1086 | WP_000129752.1 | tRNA pseudouridine(13) synthase TruD | - |
| C1H56_RS01510 (C1H56_01510) | surE | 290550..291302 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| C1H56_RS01515 (C1H56_01515) | - | 291295..291921 (+) | 627 | WP_000002982.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| C1H56_RS01520 (C1H56_01520) | nlpD | 291921..292850 (+) | 930 | WP_053036405.1 | murein hydrolase activator NlpD | - |
| C1H56_RS01525 (C1H56_01525) | rpoS | 292924..293931 (+) | 1008 | WP_000116737.1 | RNA polymerase sigma factor RpoS | Regulator |
| C1H56_RS01530 (C1H56_01530) | mutS | 294024..296612 (-) | 2589 | WP_001894770.1 | DNA mismatch repair protein MutS | - |
| C1H56_RS01535 (C1H56_01535) | cysM | 296880..297767 (-) | 888 | WP_001279365.1 | cysteine synthase CysM | - |
| C1H56_RS01540 (C1H56_01540) | cysP | 298151..299152 (+) | 1002 | WP_001079835.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| C1H56_RS01545 (C1H56_01545) | cysT | 299229..300080 (+) | 852 | WP_000531810.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| C1H56_RS01550 (C1H56_01550) | cysW | 300091..300954 (+) | 864 | WP_000951362.1 | sulfate ABC transporter permease subunit CysW | - |
| C1H56_RS01555 (C1H56_01555) | - | 300951..302081 (+) | 1131 | WP_000027776.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| C1H56_RS01560 (C1H56_01560) | pncC | 302248..302754 (+) | 507 | WP_000853811.1 | nicotinamide-nucleotide amidase | - |
| C1H56_RS01565 (C1H56_01565) | recA | 302888..303952 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| C1H56_RS01570 (C1H56_01570) | recX | 304085..304543 (+) | 459 | WP_000006855.1 | recombination regulator RecX | - |
| C1H56_RS01575 (C1H56_01575) | alaS | 304716..307298 (+) | 2583 | WP_000481017.1 | alanine--tRNA ligase | - |
| C1H56_RS01580 (C1H56_01580) | - | 307502..308689 (+) | 1188 | WP_001883372.1 | aspartate kinase | - |
| C1H56_RS01585 (C1H56_01585) | csrA | 308781..308978 (+) | 198 | WP_000906485.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38534.39 Da Isoelectric Point: 4.3648
>NTDB_id=264541 C1H56_RS01525 WP_000116737.1 292924..293931(+) (rpoS) [Vibrio cholerae strain A1552]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
Nucleotide
Download Length: 1008 bp
>NTDB_id=264541 C1H56_RS01525 WP_000116737.1 292924..293931(+) (rpoS) [Vibrio cholerae strain A1552]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
100 |
100 |
1 |