Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV163_RS10170 Genome accession   NZ_CP031330
Coordinates   1717438..1717944 (-) Length   168 a.a.
NCBI ID   WP_002225854.1    Uniprot ID   Q9JXL8
Organism   Neisseria meningitidis strain M21955     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712438..1722944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS10155 - 1712459..1713130 (-) 672 WP_002225856.1 Fic family protein -
  DV163_RS10165 polA 1714476..1717292 (-) 2817 WP_002244329.1 DNA polymerase I -
  DV163_RS10170 luxS 1717438..1717944 (-) 507 WP_002225854.1 S-ribosylhomocysteine lyase Regulator
  DV163_RS10175 - 1717966..1718385 (-) 420 WP_002225853.1 DUF2251 domain-containing protein -
  DV163_RS10180 - 1718411..1719427 (-) 1017 WP_002225852.1 YeiH family protein -
  DV163_RS10185 cyaY 1719454..1719777 (-) 324 WP_002225851.1 iron donor protein CyaY -
  DV163_RS10190 - 1719848..1720018 (+) 171 WP_002225850.1 lipoprotein -
  DV163_RS10195 lysA 1720029..1721273 (+) 1245 WP_002225849.1 diaminopimelate decarboxylase -
  DV163_RS10200 - 1721309..1721401 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DV163_RS10205 - 1721398..1722933 (-) 1536 WP_002221654.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18653.43 Da        Isoelectric Point: 5.9079

>NTDB_id=264496 DV163_RS10170 WP_002225854.1 1717438..1717944(-) (luxS) [Neisseria meningitidis strain M21955]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPGKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=264496 DV163_RS10170 WP_002225854.1 1717438..1717944(-) (luxS) [Neisseria meningitidis strain M21955]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACTAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCTGGAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JXL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

99.405

0.762