Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CF001_RS11395 Genome accession   NZ_CP025930
Coordinates   290163..290903 (+) Length   246 a.a.
NCBI ID   WP_012457382.1    Uniprot ID   B2RHE4
Organism   Porphyromonas gingivalis ATCC 33277     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285163..295903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF001_RS11375 (CF001_0266) aspS 285606..287369 (-) 1764 WP_012457378.1 aspartate--tRNA ligase -
  CF001_RS21950 - 287555..287824 (-) 270 WP_143733436.1 DUF1661 domain-containing protein -
  CF001_RS11380 (CF001_0267) ribD 287799..288791 (-) 993 WP_012457379.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CF001_RS11385 (CF001_0268) prmC 288816..289697 (+) 882 WP_012457380.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CF001_RS11390 (CF001_0269) - 289694..290179 (+) 486 WP_012457381.1 regulatory protein RecX -
  CF001_RS11395 (CF001_0270) comF 290163..290903 (+) 741 WP_012457382.1 ComF family protein Machinery gene
  CF001_RS11400 (CF001_0271) - 291033..293102 (-) 2070 WP_012457383.1 M13 family metallopeptidase -
  CF001_RS11405 (CF001_0272) - 293121..294023 (-) 903 WP_012457384.1 nucleotidyltransferase -
  CF001_RS21085 - 294205..294345 (-) 141 WP_021663364.1 hypothetical protein -
  CF001_RS11410 (CF001_0274) - 294443..295024 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27445.92 Da        Isoelectric Point: 10.0451

>NTDB_id=264492 CF001_RS11395 WP_012457382.1 290163..290903(+) (comF) [Porphyromonas gingivalis ATCC 33277]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYGLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=264492 CF001_RS11395 WP_012457382.1 290163..290903(+) (comF) [Porphyromonas gingivalis ATCC 33277]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACGGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTACCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RHE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996

Multiple sequence alignment