Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXW53_RS02185 Genome accession   NZ_CP025920
Coordinates   384022..384651 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 103605     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 379022..389651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW53_RS02170 helD 379264..381318 (-) 2055 WP_000420536.1 DNA helicase IV -
  CXW53_RS02175 yccF 381441..381887 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CXW53_RS02180 yccS 381897..384059 (+) 2163 WP_000875015.1 YccS family putative transporter -
  CXW53_RS02185 sxy/tfoX 384022..384651 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXW53_RS02190 sulA 384870..385379 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXW53_RS02195 ompA 385736..386788 (+) 1053 WP_000750419.1 porin OmpA -
  CXW53_RS02200 matP 386863..387315 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXW53_RS02205 ycbZ 387501..389261 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264470 CXW53_RS02185 WP_000839153.1 384022..384651(-) (sxy/tfoX) [Escherichia coli strain 103605]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264470 CXW53_RS02185 WP_000839153.1 384022..384651(-) (sxy/tfoX) [Escherichia coli strain 103605]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment