Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXW72_RS14835 Genome accession   NZ_CP025913
Coordinates   3028940..3029569 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 203740     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3023940..3034569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW72_RS14815 ycbZ 3024342..3026102 (-) 1761 WP_000156518.1 AAA family ATPase -
  CXW72_RS14820 matP 3026288..3026740 (+) 453 WP_004000276.1 macrodomain Ter protein MatP -
  CXW72_RS14825 ompA 3026816..3027856 (-) 1041 WP_000750416.1 porin OmpA -
  CXW72_RS14830 sulA 3028212..3028721 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXW72_RS14835 sxy/tfoX 3028940..3029569 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXW72_RS14840 yccS 3029532..3031694 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CXW72_RS14845 yccF 3031704..3032150 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXW72_RS14850 helD 3032273..3034327 (+) 2055 WP_001735080.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264442 CXW72_RS14835 WP_000839153.1 3028940..3029569(+) (sxy/tfoX) [Escherichia coli strain 203740]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264442 CXW72_RS14835 WP_000839153.1 3028940..3029569(+) (sxy/tfoX) [Escherichia coli strain 203740]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment