Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DV167_RS11470 Genome accession   NZ_CP031329
Coordinates   1955333..1955839 (-) Length   168 a.a.
NCBI ID   WP_002243066.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950333..1960839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS11455 - 1950378..1951049 (-) 672 WP_002225856.1 Fic family protein -
  DV167_RS11465 polA 1952395..1955187 (-) 2793 WP_002251435.1 DNA polymerase I -
  DV167_RS11470 luxS 1955333..1955839 (-) 507 WP_002243066.1 S-ribosylhomocysteine lyase Regulator
  DV167_RS11475 - 1955861..1956280 (-) 420 WP_002243080.1 DUF2251 domain-containing protein -
  DV167_RS11480 - 1956306..1957322 (-) 1017 WP_002225852.1 YeiH family protein -
  DV167_RS11485 cyaY 1957349..1957672 (-) 324 WP_002240807.1 iron donor protein CyaY -
  DV167_RS11490 - 1957743..1957913 (+) 171 WP_002225850.1 lipoprotein -
  DV167_RS11495 lysA 1957924..1959144 (+) 1221 WP_002240806.1 diaminopimelate decarboxylase -
  DV167_RS11500 - 1959204..1959296 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  DV167_RS11505 - 1959293..1960828 (-) 1536 WP_002229988.1 sodium-dependent transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18695.47 Da        Isoelectric Point: 5.5451

>NTDB_id=264430 DV167_RS11470 WP_002243066.1 1955333..1955839(-) (luxS) [Neisseria meningitidis strain M22425]
MPLLDSFKVDHTRMHAPAVRVAKTMATPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=264430 DV167_RS11470 WP_002243066.1 1955333..1955839(-) (luxS) [Neisseria meningitidis strain M22425]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGGCCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCCGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCCGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAACGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768