Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXW77_RS21410 Genome accession   NZ_CP025910
Coordinates   4298590..4299219 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 204446     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4293590..4304219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW77_RS21395 helD 4293832..4295886 (-) 2055 WP_000420536.1 DNA helicase IV -
  CXW77_RS21400 yccF 4296009..4296455 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CXW77_RS21405 yccS 4296465..4298627 (+) 2163 WP_000875015.1 YccS family putative transporter -
  CXW77_RS21410 sxy/tfoX 4298590..4299219 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXW77_RS21415 sulA 4299438..4299947 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXW77_RS21420 ompA 4300304..4301356 (+) 1053 WP_000750419.1 porin OmpA -
  CXW77_RS21425 matP 4301431..4301883 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CXW77_RS21430 ycbZ 4302069..4303829 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264423 CXW77_RS21410 WP_000839153.1 4298590..4299219(-) (sxy/tfoX) [Escherichia coli strain 204446]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264423 CXW77_RS21410 WP_000839153.1 4298590..4299219(-) (sxy/tfoX) [Escherichia coli strain 204446]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment