Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   DV167_RS09820 Genome accession   NZ_CP031329
Coordinates   1676783..1678042 (-) Length   419 a.a.
NCBI ID   WP_002250939.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1671783..1683042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS13765 - 1672085..1672234 (-) 150 WP_033911912.1 hypothetical protein -
  DV167_RS09800 - 1672252..1672449 (-) 198 WP_002218528.1 hypothetical protein -
  DV167_RS09805 - 1672460..1673476 (-) 1017 WP_002250942.1 lysozyme inhibitor LprI family protein -
  DV167_RS09810 gltS 1673575..1674789 (-) 1215 WP_002250941.1 sodium/glutamate symporter -
  DV167_RS09815 - 1675007..1676413 (-) 1407 WP_002250940.1 tetratricopeptide repeat protein -
  DV167_RS09820 kpsS 1676783..1678042 (-) 1260 WP_002250939.1 capsule biosynthesis protein Regulator
  DV167_RS09825 - 1678182..1680638 (-) 2457 WP_332835369.1 sugar phosphate nucleotidyltransferase -
  DV167_RS09830 rffG 1680662..1681729 (-) 1068 WP_002250937.1 dTDP-glucose 4,6-dehydratase -
  DV167_RS09835 galE 1681825..1682844 (-) 1020 WP_002250936.1 UDP-glucose 4-epimerase GalE -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 48754.65 Da        Isoelectric Point: 9.0773

>NTDB_id=264420 DV167_RS09820 WP_002250939.1 1676783..1678042(-) (kpsS) [Neisseria meningitidis strain M22425]
MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLANWLTANGKTVHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQ
EYITQHHIQAVVCFGDTRPYHVIAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
KAPTPVRVGFTPMAKNAIRYYIELFRNLRKYPDYIHHRAPNAGHYLKPWSLSILKRLNYYIEDIQIAKRVEAGKYGKFFI
VPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAPADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELKGRVIYVHDVP
LPVFLRHGLGMVTINSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLNVTQINGNF
YSQVFFPNKNTSDSSTPTT

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=264420 DV167_RS09820 WP_002250939.1 1676783..1678042(-) (kpsS) [Neisseria meningitidis strain M22425]
ATGAAACAGACCGTCCTCAAAAATAACCTGCAAAACCTGCTTGAAAGCGCAGAAAATATCCTGCTGCTTCAAGGCCCTGT
CGGCGATTTTTTTCTGCGCCTTGCCAATTGGCTGACTGCAAACGGCAAAACCGTACATAAATTCAACTTTAATGCAGGCG
ACGACTATTTTTATCCGCCCACTCAAGCGCATACCGTTGTTTTTAACGACAACTACGATGCCTTTCCTGAGTTTTTGCAA
GAATACATCACTCAACATCACATCCAGGCCGTTGTCTGCTTTGGCGACACACGCCCTTATCACGTCATTGCAAAACGCAT
TGCAAACGAAAACCAAGCCAGTTTCTGGGCGTTTGAAGAAGGCTATTTCCGCCCCTACTACATCACCTTAGAAAAAGACG
GCGTCAACGCATTTTCCCCGTTGCCGCGCCGTGCCGACTTTTTTCTTGAACAATTCCCTAAGCTTGCCCAGCAAGAATAT
AAAGCGCCAACGCCGGTACGCGTCGGATTTACGCCCATGGCAAAAAACGCCATCCGTTACTATATCGAGTTGTTCCGCAA
TCTACGCAAATACCCCGACTACATCCACCACCGCGCACCCAATGCCGGCCATTACCTCAAACCGTGGTCGCTCTCCATCC
TCAAGCGTTTGAACTACTATATTGAAGACATCCAAATCGCCAAACGTGTGGAAGCAGGCAAATACGGCAAGTTTTTTATT
GTTCCCTTGCAGGTATTCAACGACAGCCAAGTCCGTATCCATTGCGACTTTCCCAGCGTCCGCAGCTTCCTGCTCCATGT
TTTGAGTTCATTTGCCGAGCACGCGCCTGCCGATACCAACATCATCATCAAGCATCATCCGATGGACCGCGGTTTTATCG
ACTACTGGCGCGACATTAAACGCTTTATCAAAGAACATCCCGAACTCAAAGGCCGCGTGATTTATGTCCATGATGTCCCC
CTGCCCGTTTTCCTGCGCCACGGTCTCGGCATGGTCACCATCAACAGCACCAGCGGCCTGTCCGGACTGATTCACAATAT
GCCAGTTAAGGTTCTCGGCCGTGCCTATTATGATATTCCCGGCATTACTGACCAAAATACCTTGGCAGAATTTTGGAATC
ATCCGACACCGCCTGACAAAGAGCTGTTTCATGCCTACCGTATGTACCACCTCAACGTGACCCAAATTAACGGCAACTTC
TACAGTCAGGTCTTTTTTCCTAACAAAAACACATCCGACTCTTCCACACCAACAACCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.325

94.033

0.36