Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXV43_RS05970 Genome accession   NZ_CP025903
Coordinates   1247025..1247654 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 300709     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242025..1252654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXV43_RS05950 ycbZ 1242426..1244186 (-) 1761 WP_000156518.1 AAA family ATPase -
  CXV43_RS05955 matP 1244372..1244824 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CXV43_RS05960 ompA 1244900..1245940 (-) 1041 WP_000750416.1 porin OmpA -
  CXV43_RS05965 sulA 1246297..1246806 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CXV43_RS05970 sxy/tfoX 1247025..1247654 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CXV43_RS05975 yccS 1247617..1249779 (-) 2163 WP_000875061.1 YccS family putative transporter -
  CXV43_RS05980 yccF 1249789..1250235 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CXV43_RS05985 helD 1250358..1252412 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=264385 CXV43_RS05970 WP_000839153.1 1247025..1247654(+) (sxy/tfoX) [Escherichia coli strain 300709]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=264385 CXV43_RS05970 WP_000839153.1 1247025..1247654(+) (sxy/tfoX) [Escherichia coli strain 300709]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment